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WormBase Tree Display for Gene: WBGene00021465

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Name Class

WBGene00021465SMapS_parentSequenceY39G10AR
IdentityVersion2
Name (5)
DB_infoDatabaseAceViewgene1C889
WormQTLgeneWBGene00021465
WormFluxgeneWBGene00021465
NDBlocus_tagCELE_Y39G10AR.7
NCBIgene189772
RefSeqproteinNM_058560.6
NM_001306433.2
TrEMBLUniProtAccQ95XQ9
X5M5Y4
UniProt_GCRPUniProtAccX5M5Y4
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Apr 2015 12:07:40WBPerson2970Name_changeCGC_nameekl-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classekl
Allele (33)
RNASeq_FPKM (74)
Ortholog (23)
ParalogWBGene00018483Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplpppppp; ABprpppppp; Caapa; germ line; and head mesodermal cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including glp-1; dpy-10; and eat-2 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including methylmercuric chloride; Alovudine; and Zidovudine based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY39G10AR.7a
Y39G10AR.7b
Corresponding_transcriptY39G10AR.7a.1
Y39G10AR.7b.1
Associated_featureWBsf217297
Experimental_infoRNAi_resultWBRNAi00004601Inferred_automaticallyRNAi_primary
WBRNAi00026673Inferred_automaticallyRNAi_primary
WBRNAi00110923Inferred_automaticallyRNAi_primary
WBRNAi00082413Inferred_automaticallyRNAi_primary
WBRNAi00085775Inferred_automaticallyRNAi_primary
WBRNAi00056280Inferred_automaticallyRNAi_primary
WBRNAi00004602Inferred_automaticallyRNAi_primary
WBRNAi00026672Inferred_automaticallyRNAi_primary
Expr_patternExpr1021885
Expr1039378
Expr1159763
Expr2011269
Expr2029505
Drives_constructWBCnstr00024544
Construct_productWBCnstr00024544
Microarray_results (20)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053321:lin-15B(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00054571:BPA_F3_germline_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055334:DLC-1_interacting
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057254:MWCNT_upregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059426:Ag-nanoparticles_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061274:hypergravity_10xg_downregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061340:DVC_parent
WBPaper00061340:Parent_of_tail_spike_and_hyp10
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:let-99_22121-B0238.9_11154
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4386_cluster_4_2
cgc4489_group_3
WBPaper00025032:cluster_35
WBPaper00026980:intestine_enriched
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00036429:glp-1(oz112)_upregulated
WBPaper00040821:Au-NP_regulated
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-4317_vs_OP50_10d
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00055435:AuNPs_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_F
[cgc6390]:intrinsic
Map_infoPositivePositive_cloneY39G10ARInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-9.37143
ReferenceWBPaper00043583
WBPaper00048294
MethodGene