WormBase Tree Display for Gene: WBGene00021456

WBGene00021456 SMap: S_parent: Sequence: Y39F10B
  Identity: Version: 2
    Name: CGC_name: rfip-2
      Sequence_name: Y39F10B.1
      Molecular_name: Y39F10B.1a
        Y39F10B.1a.1
        CE42596
        Y39F10B.1b
        CE42580
        Y39F10B.1b.1
      Other_name: CELE_Y39F10B.1 Accession_evidence: NDB BX284602
      Public_name: rfip-2
    DB_info: Database: AceView gene 2B21
        WormQTL gene WBGene00021456
        WormFlux gene WBGene00021456
        NDB locus_tag CELE_Y39F10B.1
        Panther gene CAEEL|WormBase=WBGene00021456|UniProtKB=B2FD95
          family PTHR15746
        NCBI gene 173462
        RefSeq protein NM_182231.7
            NM_061397.5
        TREEFAM TREEFAM_ID TF317451
        TrEMBL UniProtAcc B2FD96
            B2FD95
        UniProt_GCRP UniProtAcc B2FD95
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Nov 2018 16:28:50 WBPerson1983 Name_change: CGC_name: rfip-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rfip
    Allele (192)
    RNASeq_FPKM (74)
    GO_annotation: 00005850
      00005851
      00125812
    Contained_in_operon: CEOP2032
    Ortholog (24)
    Structured_description: Automated_description: Predicted to enable small GTPase binding activity. Predicted to be involved in regulated exocytosis. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human RAB11FIP1 (RAB11 family interacting protein 1) and RAB11FIP5 (RAB11 family interacting protein 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39F10B.1a
      Y39F10B.1b
    Corresponding_CDS_history: Y39F10B.1a:wp190
      Y39F10B.1b:wp190
    Corresponding_transcript: Y39F10B.1a.1
      Y39F10B.1b.1
    Other_sequence (12)
    Associated_feature (3)
  Experimental_info: RNAi_result: WBRNAi00001991 Inferred_automatically: RNAi_primary
      WBRNAi00060304 Inferred_automatically: RNAi_primary
      WBRNAi00060307 Inferred_automatically: RNAi_primary
      WBRNAi00020413 Inferred_automatically: RNAi_primary
      WBRNAi00060306 Inferred_automatically: RNAi_primary
      WBRNAi00056256 Inferred_automatically: RNAi_primary
      WBRNAi00060305 Inferred_automatically: RNAi_primary
      WBRNAi00020412 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028018
      Expr1039373
      Expr1159739
      Expr2007391
      Expr2025626
    Microarray_results (25)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00044616:alg-3-4_downregulated_gene
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_specific
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060951:mrpl-2(osa3)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:AIA
      WBPaper00061340:FLP
      WBPaper00061340:mc1
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:NSM_parent
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061527:T23B5.3_15993-C17D12.1
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065841:34_1
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026980:intestine_enriched
      WBPaper00027111:eri-1(mg366)_upregulated
      WBPaper00027111:rde-3(r459)_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00036286:Pattern_F
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
    SAGE_tag (12)
    Interaction: WBInteraction000522597
      WBInteraction000566203
      WBInteraction000566205
  Map_info: Map: II Position: -15.5914
    Positive: Positive_clone: Y39F10B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00041328
    WBPaper00064601
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene