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WormBase Tree Display for Gene: WBGene00020380

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Name Class

WBGene00020380SMapS_parentSequenceT09B4
Identity (6)
Gene_infoBiotypeSO:0001217
Allele (20)
RNASeq_FPKM (74)
Ortholog (11)
ParalogWBGene00001483Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplpppppp; ABprpppppp; MSpaapaa; intestine; and pharynx based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; eat-2; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including Mercuric Chloride; multi-walled carbon nanotube; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: BTG-like domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST09B4.6
Corresponding_CDS_historyT09B4.6:wp221
Corresponding_transcriptT09B4.6.1
Associated_featureWBsf664326
Experimental_infoRNAi_resultWBRNAi00004182Inferred_automaticallyRNAi_primary
WBRNAi00052934Inferred_automaticallyRNAi_primary
Expr_patternExpr1018220
Expr1156536
Expr2006032
Expr2024247
Microarray_results (20)
Expression_clusterWBPaper00024505:pharyngeal_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00041071:spe-44_downregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044316:HgCl2_20uM_upregulated
WBPaper00044736:rising_dev_expression
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045521:Spermatogenic
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00046887:WNT-target
WBPaper00049377:MWCNT_downregulated
WBPaper00050231:male_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053599:female_vs_male_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055648:sperm_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056471:flcn-1(ok975)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:M1_parent
WBPaper00061340:Parent_of_tail_spike_and_hyp10
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:C01G10.14-dct-9_3227
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062305:P.brevicompactum_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00062672:let-418(n3536)_upregulated
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064505:tamoxifen_downregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065288:mdt-15(tm2182)_upregulated
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_18
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00032948:StarveUp3
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_E
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00048637:lin-35(n745)_starvation_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_A
Interaction (126)
Map_infoPositivePositive_cloneT09B4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI0.835997
ReferenceWBPaper00038491
WBPaper00055090
MethodGene