WormBase Tree Display for Gene: WBGene00020189

WBGene00020189 SMap: S_parent: Sequence: T03F1
  Identity: Version: 2
    Name (5)
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Jan 2013 16:32:43 WBPerson2970 Name_change: CGC_name: tfbm-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tfbm
    Allele (78)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP1120
    Ortholog (37)
    Paralog: WBGene00008455 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable mitochondrial transcription factor activity and rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to be involved in rRNA methylation and transcription initiation at mitochondrial promoter. Predicted to be located in mitochondrial matrix. Is an ortholog of human TFB1M (transcription factor B1, mitochondrial). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T03F1.7
    Corresponding_transcript: T03F1.7.1
    Other_sequence (25)
    Associated_feature: WBsf664073
      WBsf219190
  Experimental_info: RNAi_result: WBRNAi00035097 Inferred_automatically: RNAi_primary
      WBRNAi00052279 Inferred_automatically: RNAi_primary
      WBRNAi00052286 Inferred_automatically: RNAi_primary
      WBRNAi00066571 Inferred_automatically: RNAi_primary
      WBRNAi00004116 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023096
      Expr1038781
      Expr1155917
      Expr2017376
      Expr2035513
    Drives_construct: WBCnstr00025313
    Construct_product: WBCnstr00025313
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058969:RIS_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:M4_parent
      WBPaper00061340:pm7
      WBPaper00061340:Rectal_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:F31C3.4_6048-cutc-1_15804
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00061651:AFD_enriched
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065841:85_0
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4489_group_21
      WBPaper00025032:cluster_20
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_B
      WBPaper00037611:GLD-2-associated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00049538:atfs-1(et18)_upregulated
      [cgc5767]:cluster_20
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction (30)
  Map_info: Map: I Position: -1.99378
    Positive: Positive_clone: T03F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00035543
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene