WormBase Tree Display for Gene: WBGene00018994

WBGene00018994 SMap: S_parent: Sequence: F56H1
  Identity: Version: 2
    Name: Sequence_name: F56H1.3
      Molecular_name: F56H1.3
      Other_name: CELE_F56H1.3 Accession_evidence: NDB BX284601
      Public_name: F56H1.3
    DB_info: Database: AceView gene 1G306
        WormQTL gene WBGene00018994
        SignaLink protein WBGene00018994
        WormFlux gene WBGene00018994
        NDB locus_tag CELE_F56H1.3
        NCBI gene 186411
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Sep 2019 11:16:46 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele (60)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog (18)
    Structured_description: Automated_description: Enriched in ABalpppapa; ABpraaaapa; germ line; mechanosensory neurons; and in male based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; hsf-1; and eat-2 based on RNA-seq; tiling array; and microarray studies. Is affected by ten chemicals including hydrogen sulfide; methylmercuric chloride; and manganese chloride based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: F56H1.3:wp178
      F56H1.3:wp273
    Corresponding_pseudogene: F56H1.3
  Experimental_info: Expr_pattern: Expr1152517
      Expr2004316
      Expr2022540
    Drives_construct: WBCnstr00026141
    Construct_product: WBCnstr00026141
    Microarray_results (16)
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00040285:H2S_24hr_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044037:eat-2_regulated_nhr-62_dependent
      WBPaper00044037:eat-2_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045050:drh-3 (ne4253)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Spermatogenic
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00048611:MnCl2_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050231:male_enriched
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059426:SiO2-nanoparticles_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:F14F7.4_16243-ZK353.3
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062305:P.brevicompactum_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:eri-1(mg366)_downregulated
      WBPaper00027111:rde-3(ne298)_downregulated
      WBPaper00027111:rde-3(r459)_downregulated
      WBPaper00027111:rrf-2(ok210)_downregulated
      WBPaper00032165:differentially_expressed_with_age_medoid_3
      WBPaper00036286:Pattern_G
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction (11)
  Map_info: Positive: Positive_clone: F56H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 0.42007
  Method: Gene