WormBase Tree Display for Gene: WBGene00018125

WBGene00018125 SMap: S_parent: Sequence: F36H12
  Identity (6)
  Gene_info: Biotype: SO:0000336
    Gene_class: rmd
    Allele: WBVar00909438
      WBVar00909439
      WBVar01499365
      WBVar00909440
      WBVar01499754
      WBVar01499395
      WBVar01499396
      WBVar01499242
      WBVar01499633
      WBVar01500245
    RNASeq_FPKM (74)
    Ortholog: WBGene00066579 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00026772 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00142298 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
      WBGene00138135 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00191028 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
    Paralog: WBGene00007190 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00007786 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009369 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00011501 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012976 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00015855 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020070 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020711 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in germ line and in male based on RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by nine chemicals including Ethanol; methylmercuric chloride; and iron oxide nanoparticle based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: F36H12.11:wp240
    Corresponding_pseudogene: F36H12.11
    Other_sequence: GW412750.1
      PSC01516
  Experimental_info: Expr_pattern: Expr1150408
    Microarray_results: SMD_F36H12.11
      Aff_F36H12.11
    Expression_cluster: WBPaper00029047:atx-3_upregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00041954:ethanol_upregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044760:germline_specific
      WBPaper00045521:Spermatogenic
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00046741:Garlic-Extract_downregulated_mRNA
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050231:male_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051437:Cit-SPIONs_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00053657:JU2519_M.humicola-infection_24hr
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:F07A5.2-R10E9.2
      WBPaper00061853:osm-3(dh441)_downregulated
      WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064716:paraquat_downregulated
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_11
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031184:acrylamide_upregulated
    Interaction (281)
  Map_info: Map: IV Position: 1.58201
    Positive: Positive_clone: F36H12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene