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WormBase Tree Display for Gene: WBGene00018039

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Name Class

WBGene00018039SMapS_parentSequenceF35D2
IdentityVersion2
NameSequence_nameF35D2.1
Molecular_nameF35D2.1
F35D2.1.1
CE45842
Other_nameCELE_F35D2.1Accession_evidenceNDBBX284602
Public_nameF35D2.1
DB_infoDatabaseAceViewgene2H865
WormQTLgeneWBGene00018039
WormFluxgeneWBGene00018039
NDBlocus_tagCELE_F35D2.1
PanthergeneCAEEL|WormBase=WBGene00018039|UniProtKB=F1LIL6
familyPTHR36520
NCBIgene185276
RefSeqproteinNM_063189.4
TREEFAMTREEFAM_IDTF315642
TrEMBLUniProtAccF1LIL6
UniProt_GCRPUniProtAccF1LIL6
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:59WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
220 Jan 2010 15:57:12WBPerson1867EventSplit_intoWBGene00194916
Split_intoWBGene00194916
StatusLive
Gene_infoBiotypeSO:0001217
Allele (30)
RNASeq_FPKM (74)
Ortholog (32)
ParalogWBGene00013891Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016132Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00018040Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00220261Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in OLL; PVD; head mesodermal cell; and hypodermis based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by nine chemicals including Ethanol; methylmercury hydroxide; and manganese chloride based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF35D2.1
Corresponding_CDS_historyF35D2.1:wp156
F35D2.1:wp211
F35D2.1:wp224
Corresponding_transcriptF35D2.1.1
Associated_featureWBsf644393
Experimental_infoRNAi_resultWBRNAi00046326Inferred_automaticallyRNAi_primary
WBRNAi00014323Inferred_automaticallyRNAi_primary
Expr_patternExpr1016376
Expr1150215
Expr2003315
Expr2021528
Microarray_results (13)
Expression_clusterWBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00041954:ethanol_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
WBPaper00043945:MeHg_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045316:prg-1_upregulated_L4
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00048611:MnCl2_upregulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050801:SET-4_dauer_regulome
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-4(RNAi)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058927:high-redox-state_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_downregulated
WBPaper00059231:alh-6(lax105)_L4_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061106:endu-2(tm4977)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:hmc
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:dos-2-grd-2
WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062534:fat-P-80_downregulated
WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064871:PA14_downregulated_AWA
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00066004:tdp-1(csb38)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_6
WBPaper00025141:N2_Expressed_Genes
WBPaper00036123:Atrazine_regulated
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00038172:crh-1null_down_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00039866:ClassComp_daf-19_downregulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_B
Interaction (95)
Map_infoPositivePositive_cloneF35D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.50473
MethodGene