WormBase Tree Display for Gene: WBGene00017080

WBGene00017080 SMap: S_parent: Sequence: DC2
  Identity: Version: 2
    Name: CGC_name: lec-12 Paper_evidence: WBPaper00040257
      Sequence_name: DC2.3
      Molecular_name (21)
      Other_name: CELE_DC2.3 Accession_evidence: NDB BX284605
      Public_name: lec-12
    DB_info: Database: AceView gene 5A687
        WormQTL gene WBGene00017080
        WormFlux gene WBGene00017080
        NDB locus_tag CELE_DC2.3
        Panther gene CAEEL|WormBase=WBGene00017080|UniProtKB=Q5ZR27
          family PTHR11346
        NCBI gene 178548
        RefSeq protein NM_001028587.4
            NM_001313140.3
            NM_001313139.3
            NM_001028588.6
            NM_001313138.1
            NM_001313136.3
            NM_001313137.3
        TREEFAM TREEFAM_ID TF323681
        TrEMBL UniProtAcc A0A0K3AUS0
            A0A0K3AVE8
            A0A0K3ASC7
            A0A0K3ARW6
            H2KZJ9
            Q5ZR27
            A0A0K3AXP2
        UniProt_GCRP UniProtAcc Q5ZR27
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 13 Oct 2011 15:59:42 WBPerson2970 Name_change: CGC_name: lec-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lec
    Allele (123)
    RNASeq_FPKM (74)
    GO_annotation: 00000872
      00000982
      00000983
      00022350
      00122562
    Contained_in_operon: CEOP5588
    Ortholog (45)
    Paralog (27)
    Structured_description: Automated_description: Predicted to enable galactoside binding activity. Predicted to be located in membrane. Is an ortholog of human LGALS4 (galectin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: DC2.3a
      DC2.3b
      DC2.3c
      DC2.3d
      DC2.3e
      DC2.3f
      DC2.3g
    Corresponding_CDS_history: DC2.3:wp131
      DC2.3a:wp152
      DC2.3b:wp188
    Corresponding_transcript: DC2.3a.1
      DC2.3b.1
      DC2.3c.1
      DC2.3d.1
      DC2.3e.1
      DC2.3f.1
      DC2.3g.1
    Other_sequence (37)
    Associated_feature: WBsf661094
      WBsf999096
      WBsf1019029
      WBsf231310
      WBsf231311
  Experimental_info: RNAi_result: WBRNAi00000892 Inferred_automatically: RNAi_primary
      WBRNAi00043538 Inferred_automatically: RNAi_primary
    Expr_pattern (5)
    Microarray_results (22)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00040990:PA14_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049334:CE_intestine_enriched
      WBPaper00049498:npr-1(ur89)_regulated_7
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_specific
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056619:CEPsh_enriched
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058948:PA14_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061340:g1P
      WBPaper00061527:C10C5.2-Y58A7A.3
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00061651:Rectal_gland_enriched
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065841:11_2
      WBPaper00025032:cluster_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_D
      WBPaper00037695:LD_3-day
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
    Interaction: WBInteraction000039136
      WBInteraction000043884
      WBInteraction000043889
      WBInteraction000043890
      WBInteraction000140055
      WBInteraction000440230
      WBInteraction000553241
  Map_info: Map: V Position: -20.01 Error: 6.3e-05
    Positive: Positive_clone: DC2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040257
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene