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WormBase Tree Display for Gene: WBGene00016839

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Name Class

WBGene00016839SMapS_parentSequenceC50F2
IdentityVersion1
NameSequence_nameC50F2.5
Molecular_nameC50F2.5
C50F2.5.1
CE08911
Other_nameCELE_C50F2.5Accession_evidenceNDBBX284601
Public_nameC50F2.5
DB_infoDatabaseAceViewgene1E464
WormFluxgeneWBGene00016839
NDBlocus_tagCELE_C50F2.5
PanthergeneCAEEL|WormBase=WBGene00016839|UniProtKB=P91179
familyPTHR46163
NCBIgene171973
RefSeqproteinNM_058855.5
TREEFAMTREEFAM_IDTF318637
TrEMBLUniProtAccP91179
UniProt_GCRPUniProtAccP91179
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (19)
RNASeq_FPKM (74)
GO_annotation00122368
00122369
Contained_in_operonCEOP1132
Ortholog (45)
Paralog (64)
Structured_descriptionAutomated_descriptionPredicted to enable protein tyrosine phosphatase activity. Human ortholog(s) of this gene implicated in gastric adenocarcinoma. Is an ortholog of human PTPRG (protein tyrosine phosphatase receptor type G) and PTPRZ1 (protein tyrosine phosphatase receptor type Z1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:3717Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9685)
Molecular_infoCorresponding_CDSC50F2.5
Corresponding_transcriptC50F2.5.1
Other_sequenceCBC14167_1
Associated_featureWBsf983266
WBsf1009574
WBsf219203
Experimental_infoRNAi_resultWBRNAi00042930Inferred_automaticallyRNAi_primary
WBRNAi00003211Inferred_automaticallyRNAi_primary
WBRNAi00042384Inferred_automaticallyRNAi_primary
WBRNAi00003143Inferred_automaticallyRNAi_primary
WBRNAi00030035Inferred_automaticallyRNAi_primary
Expr_patternExpr1146899
Expr2001830
Expr2020056
Drives_constructWBCnstr00027764
Construct_productWBCnstr00027764
Microarray_results (20)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00037682:sma-2_downregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:rising_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045521:Spermatogenic
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050231:male_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:GABAergic-neuron_enriched
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:female_vs_male_downregulated
WBPaper00053657:JU2519_M.humicola-infection_24hr
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055648:sperm_expressed
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:flcn-1(ok975)_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059253:stearic-acid_downregulated
WBPaper00059426:SiO2-nanoparticles_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061340:AVH
WBPaper00061340:hmc_and_homolog
WBPaper00061340:hmc_homolog
WBPaper00061341:28C_24h_downregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061479:hda-1(ne4747)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061572:oleic-acid-specific_mating_upregulated
WBPaper00061651:Sperm_enriched
WBPaper00061853:osm-3(dh441)_downregulated
WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
WBPaper00062078:NMR-HspB1_regulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062715:blmp-1(s71)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064158:xpo-1(RNAi)_downregulated
WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065841:66_0
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066038:mip-1(how5)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_11
WBPaper00005475:Aging-regulated
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00027111:rrf-3(pk1426)_upregulated
WBPaper00027342:alpha-Synuclein(WT)_upregulated
WBPaper00028948:cep-1(gk138)+UV_downregulated
WBPaper00028948:cep-1(gk138)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00035891:zip-2(RNAi)_downregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038304:octr-1_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_D
[cgc6390]:spermatogenesis-enriched
Interaction (136)
Map_infoPositivePositive_cloneC50F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-1.93246
MethodGene