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WormBase Tree Display for Gene: WBGene00016173

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Name Class

WBGene00016173SMapS_parentSequenceC27H5
IdentityVersion2
NameCGC_namefust-1Person_evidenceWBPerson1352
Sequence_nameC27H5.3
Molecular_nameC27H5.3a
C27H5.3a.1
CE27099
C27H5.3b
CE51847
C27H5.3b.1
C27H5.3b.2
Other_nameCELE_C27H5.3Accession_evidenceNDBBX284602
Public_namefust-1
DB_infoDatabaseAceViewgene2H445
WormQTLgeneWBGene00016173
WormFluxgeneWBGene00016173
NDBlocus_tagCELE_C27H5.3
PanthergeneCAEEL|WormBase=WBGene00016173|UniProtKB=Q18265
familyPTHR23238
NCBIgene174175
RefSeqproteinNM_063082.7
NM_001381492.1
TrEMBLUniProtAccQ18265
A0A1N7SYQ6
UniProt_GCRPUniProtAccQ18265
OMIMgene133450
137070
601574
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
203 Aug 2010 10:05:58WBPerson2970Name_changeCGC_namefust-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfust
Allele (42)
StrainWBStrain00001567
WBStrain00047288
WBStrain00047287
WBStrain00047289
WBStrain00050865
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (47)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in gonad; head; intestinal cell; neurons; and tail. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 6; connective tissue cancer (multiple); and essential tremor 4. Is an ortholog of human FUS (FUS RNA binding protein).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (9)
Molecular_infoCorresponding_CDSC27H5.3a
C27H5.3b
Corresponding_transcriptC27H5.3a.1
C27H5.3b.1
C27H5.3b.2
Other_sequence (37)
Associated_featureWBsf644354
WBsf988367
WBsf221563
Experimental_infoRNAi_resultWBRNAi00090580Inferred_automaticallyRNAi_primary
WBRNAi00011275Inferred_automaticallyRNAi_primary
WBRNAi00083277Inferred_automaticallyRNAi_primary
WBRNAi00076171Inferred_automaticallyRNAi_primary
WBRNAi00041374Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00002407
WBCnstr00028273
WBCnstr00042661
WBCnstr00042662
WBCnstr00042663
Construct_productWBCnstr00028273
WBCnstr00042661
WBCnstr00042662
WBCnstr00042663
Regulate_expr_clusterWBPaper00066004:fust-1(csb21)_downregulated
WBPaper00066004:fust-1(csb21)_upregulated
Microarray_results (19)
Expression_clusterWBPaper00033065:isp-1-1(qm150)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044037:eat-2_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00052987:UV_upregulated_xpc-1;csb-1
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:CFP-1_interacting_protein
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061527:dld-1-skn-1_16701
WBPaper00061527:tub-2_4713-daf-2_5288
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00064071:NHR-49_interacting
WBPaper00064080:miR-58_miRNA_interacting
WBPaper00064992:Capsaicin_downregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066004:fust-1(csb21)_downregulated
cgc4386_cluster_6_3
cgc4489_group_8
WBPaper00025032:cluster_7
WBPaper00025032:cluster_13
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:rde-3(ne298)_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031832:slr-2_regulated
WBPaper00032165:differentially_expressed_with_age_medoid_1
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_G
WBPaper00037695:WC_5-day
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042274:tbx-2(bx59)_downregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00055435:AuNPs_downregulated
[cgc5767]:cluster_4
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
Interaction (197)
Map_infoMapIIPosition0.496031Error0.000218
PositivePositive_cloneC27H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (15)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene