Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00015477

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00015477SMapS_parentSequenceC05D10
IdentityVersion2
NameCGC_nameattf-4Person_evidenceWBPerson260
WBPerson1997
Sequence_nameC05D10.1
Molecular_nameC05D10.1a
C05D10.1a.1
CE24783
C05D10.1b
CE01124
C05D10.1c
CE37698
C05D10.1b.1
C05D10.1c.1
Other_nameCELE_C05D10.1Accession_evidenceNDBBX284603
Public_nameattf-4
DB_infoDatabaseAceViewgene3H173
WormQTLgeneWBGene00015477
WormFluxgeneWBGene00015477
NDBlocus_tagCELE_C05D10.1
PanthergeneCAEEL|WormBase=WBGene00015477|UniProtKB=Q11178
familyPTHR36522
NCBIgene175858
RefSeqproteinNM_001379742.1
NM_171147.7
NM_001379741.2
SwissProtUniProtAccQ11178
TREEFAMTREEFAM_IDTF321832
UniProt_GCRPUniProtAccQ11178
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Sep 2011 11:35:55WBPerson2970Name_changeCGC_nameattf-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classattf
Allele (41)
StrainWBStrain00031990
WBStrain00030081
WBStrain00030082
RNASeq_FPKM (74)
GO_annotation00057328
Ortholog (27)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Expressed in head muscle; hypodermis; pharyngeal-intestinal valve; tail neurons; and ventral nerve cord.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC05D10.1a
C05D10.1b
C05D10.1c
Corresponding_CDS_historyC05D10.1b:wp275
Corresponding_transcriptC05D10.1a.1
C05D10.1b.1
C05D10.1c.1
Other_sequence (13)
Associated_feature (14)
Gene_product_binds (151)
Transcription_factorWBTranscriptionFactor000952
Experimental_infoRNAi_resultWBRNAi00039719Inferred_automaticallyRNAi_primary
WBRNAi00010192Inferred_automaticallyRNAi_primary
WBRNAi00028487Inferred_automaticallyRNAi_primary
WBRNAi00005561Inferred_automaticallyRNAi_primary
Expr_pattern (12)
Drives_constructWBCnstr00014261
WBCnstr00014264
WBCnstr00015188
WBCnstr00028816
Construct_productWBCnstr00016574
WBCnstr00016714
WBCnstr00028816
Microarray_results (29)
Expression_clusterWBPaper00031040:Cluster_5
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032425:up_in_alg-1
WBPaper00032425:up_in_lin-35
WBPaper00032425:up_in_rde-4
WBPaper00032425:up_in_zfp-1
WBPaper00033070:Elbe_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00040209:B.thuringiensis_downregulated_MY15
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Oogenic
WBPaper00048988:neuron_expressed
WBPaper00050094:mes-2(bn11)_upregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00054913:AKIR-1_interacting_protein
WBPaper00055334:DLC-1_interacting
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058942:henn-1(pk2295)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060951:mrpl-2(osa3)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AIN_parent
WBPaper00061340:ALM_BDU
WBPaper00061340:DB
WBPaper00061340:DD
WBPaper00061340:DVC
WBPaper00061340:DVC_parent
WBPaper00061340:GLR
WBPaper00061340:hmc_homolog
WBPaper00061340:Neuroblast_ALM_BDU
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061340:Neuroblast_URX_CEPDx
WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
WBPaper00061340:PLM_ALN_grandparent
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061340:PVP
WBPaper00061340:PVQ_parent
WBPaper00061340:PVR
WBPaper00061340:SIB
WBPaper00061527:chd-7_16664-jmjd-3.1
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00065841:114_0
WBPaper00065841:121_0
cgc4386_cluster_6_6
cgc4489_group_20
WBPaper00025032:cluster_116
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031832:slr-2_regulated
WBPaper00033101:spr-5_regulated
WBPaper00034661:AgNPs_downregulated
WBPaper00034739:N2moreDR1350
WBPaper00037695:WC_5-day
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00045673:colistin_upregulated
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(101_min)
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Interaction (28)
Map_infoMapIIIPosition-1.42234Error0.000479
PositivePositive_cloneC05D10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene