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WormBase Tree Display for Gene: WBGene00014163

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Name Class

WBGene00014163SMapS_parentSequenceZK938
IdentityVersion3
NameCGC_namernh-1.2Paper_evidenceWBPaper00027023
Sequence_nameZK938.7
Molecular_nameZK938.7
ZK938.7.1
CE51709
Other_nameCELE_ZK938.7Accession_evidenceNDBBX284602
Public_namernh-1.2
DB_infoDatabaseAceViewgene2K130
WormQTLgeneWBGene00014163
WormFluxgeneWBGene00014163
NDBlocus_tagCELE_ZK938.7
PanthergeneCAEEL|WormBase=WBGene00014163|UniProtKB=Q23676
familyPTHR10642
NCBIgene191471
RefSeqproteinNM_063720.5
TrEMBLUniProtAccQ23676
UniProt_GCRPUniProtAccQ23676
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
224 Mar 2006 09:56:26WBPerson2970Name_changeCGC_namernh-1.2
301 Jul 2016 15:07:39WBPerson1983EventSplit_intoWBGene00270290
Split_intoWBGene00270290
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrnh
Allele (16)
RNASeq_FPKM (74)
GO_annotation00079316
00079317
00079318
00079319
00120877
00120878
Paralog (26)
Structured_descriptionConcise_descriptionrnh-1.2 is one of four C. elegans genes that can encode an RNase H ribonuclease; rnh-1.2 transcripts are expressed throughout development, but preferentially in the embryo and adults.Paper_evidenceWBPaper00027023
Curator_confirmedWBPerson1843
Date_last_updated25 Feb 2014 00:00:00
Automated_descriptionPredicted to enable RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK938.7
Corresponding_CDS_historyZK938.7:wp254
Corresponding_transcriptZK938.7.1
Associated_featureWBsf665974
WBsf989156
WBsf223713
Experimental_infoRNAi_resultWBRNAi00022240Inferred_automaticallyRNAi_primary
WBRNAi00059844Inferred_automaticallyRNAi_primary
Expr_patternExpr1011764
Expr1036344
Expr1163273
Expr2015387
Expr2033621
Drives_constructWBCnstr00029260
Construct_productWBCnstr00029260
Microarray_resultsSMD_ZK938.7
GPL8673_ZK938_7P00261
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:rising_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050990:pharynx_enriched
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060886:met-2(n4256)_downregulated
WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:MC
WBPaper00061527:npp-8_4368-E01B7.1_7741
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00062672:let-418(n3536)_upregulated
WBPaper00062715:blmp-1(s71)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066038:mip-1(how5)_downregulated
WBPaper00066085:hda-3(ok1991)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_9
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (162)
Map_infoMapIIPosition1.72867Error0.000613
PositivePositive_cloneZK938Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027023
RemarkZK938.7 published as rnh-1.1Paper_evidenceWBPaper00005577
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene