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WormBase Tree Display for Gene: WBGene00013634

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Name Class

WBGene00013634SMapS_parentSequenceY105C5A
Identity (6)
Gene_infoBiotypeSO:0001217
Allele (85)
RNASeq_FPKM (74)
OrthologCSP29.g14358Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18194Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP40.g13238Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Csp5_scaffold_00586.g13189Caenorhabditis sinicaFrom_analysisWormBase-Compara
chrIV_pilon.g12647Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00015605Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00015593Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013636Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00013637Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in intestine based on RNA-seq and microarray studies. Is affected by several genes including skn-1; elt-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by six chemicals including Rifampin; Psoralens; and Sirolimus based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY105C5A.9a
Y105C5A.9b
Corresponding_CDS_historyY105C5A.9:wp234
Y105C5A.9a:wp211
Y105C5A.9b:wp211
Corresponding_transcriptY105C5A.9a.1
Y105C5A.9b.1
Associated_featureWBsf998748
Experimental_infoRNAi_resultWBRNAi00019837Inferred_automaticallyRNAi_primary
WBRNAi00055186Inferred_automaticallyRNAi_primary
Expr_patternExpr1158722
Expr2006948
Microarray_resultsSMD_Y105C5A.H
186401_at
Aff_Y105C5.H
GPL19516_CGZ0040318
GPL21109_Y105C5A.9
GPL8673_Y105C5A_9aP00029
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00033070:Rhine_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00049484:elt-2(RNAi)_downregulated_L1
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00064122:vulva_transcriptome
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:JU1400_N.parisii_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00042574:N2_OrsayVirus_upregulated
WBPaper00042574:rde-1(ne219)_OrsayVirus_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00053550:daf-19(m86)_downregulated_L1
Map_infoPositivePositive_cloneY105C5AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV14.239
MethodGene