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WormBase Tree Display for Gene: WBGene00013153

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Name Class

WBGene00013153SMapS_parentSequenceY53F4B
Identity (6)
Gene_infoBiotypeSO:0000336
Allele (41)
RNASeq_FPKM (74)
ParalogWBGene00006964Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
Structured_descriptionAutomated_descriptionEnriched in head mesodermal cell and intestine based on RNA-seq and microarray studies. Is affected by several genes including mut-16; atfs-1; and mter-4 based on microarray and RNA-seq studies. Is affected by four chemicals including Cisplatin; Doxorubicin; and copper sulfate based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDS_historyY53F4B.6:wp119
Y53F4B.6:wp197
Corresponding_pseudogeneY53F4B.6
Other_sequenceCGC00013_1
Experimental_infoMicroarray_resultsSMD_Y53F4B.I
181544_at
A_12_P119463
Aff_Y53F4B.H
GPL19516_CGZ0048923
GPL21109_Y53F4B.6
GPL8304_CE_WBGene00013153_B
Expression_clusterWBPaper00033065:clk-1(qm30)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050801:SET-4_dauer_regulome
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00055226:adr-1(tm668)_downregulated
WBPaper00056826:hmc_biased
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061527:172183_at-176110_at
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00066110:Cisplatin_upregulated_tetraploid
WBPaper00066110:Doxorubicin_upregulated_tetraploid
WBPaper00026980:intestine_enriched
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00042067:Cu2+_upregulated_WT
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(53_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Map_infoPositivePositive_cloneY53F4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII23.8846
MethodGene