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WormBase Tree Display for Gene: WBGene00013145

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Name Class

WBGene00013145SMapS_parentSequenceY53C12B
IdentityVersion2
NameCGC_namecutl-2Person_evidenceWBPerson52
Sequence_nameY53C12B.6
Molecular_nameY53C12B.6
Y53C12B.6.1
CE14904
Other_nameCELE_Y53C12B.6Accession_evidenceNDBBX284602
Public_namecutl-2
DB_infoDatabaseAceViewgene2K12
WormQTLgeneWBGene00013145
WormFluxgeneWBGene00013145
NDBlocus_tagCELE_Y53C12B.6
PanthergeneCAEEL|WormBase=WBGene00013145|UniProtKB=O18213
familyPTHR22907
NCBIgene174532
RefSeqproteinNM_063696.5
TREEFAMTREEFAM_IDTF315307
TrEMBLUniProtAccO18213
UniProt_GCRPUniProtAccO18213
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
207 May 2008 10:04:34WBPerson2970Name_changeCGC_namecutl-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcutl
Allele (44)
RNASeq_FPKM (74)
Ortholog (20)
Paralog (31)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABarppaapa; and anterior hypodermis based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-one chemicals including 1-methylnicotinamide; methylmercuric chloride; and mianserin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Zona pellucida domain and Zona pellucida-like domain.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY53C12B.6
Corresponding_transcriptY53C12B.6.1
Associated_feature (14)
Experimental_infoRNAi_resultWBRNAi00020915Inferred_automaticallyRNAi_primary
WBRNAi00057259Inferred_automaticallyRNAi_primary
WBRNAi00037407Inferred_automaticallyRNAi_primary
Expr_patternExpr1026004
Expr1035836
Expr1160696
Expr2010627
Expr2028867
Microarray_results (18)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00033065:isp-1-1(qm150)_upregulated
WBPaper00035197:fer-1_downregulated
WBPaper00036231:long-telomeres_upregulated
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00044316:CH3HgCl_2.0uM_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00046121:ecdoderm_unique
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00049498:npr-1(ur89)_regulated_4
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049954:BPS_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051388:Glucose-diet_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055482:Tunicamycin_upregulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_upregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056446:hsb-1(cg116)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00059224:tph-1(mg280)_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
WBPaper00059735:glucose_upregulated_N2
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:G2_and_W_blasts
WBPaper00061340:hyp4_hyp5_hyp6
WBPaper00061340:hyp7_AB_lineage
WBPaper00061340:hyp7_C_lineage
WBPaper00061340:P_cell
WBPaper00061340:Seam_cell
WBPaper00061340:T
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_upregulated_OP50
WBPaper00061424:Diet_MYb120_downregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:F58E6.13_17427-ifa-3
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00062672:let-418(n3536)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065029:cadmium_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066093:E.coli-purE_downregulated
WBPaper00066204:CdCl2_downregulated_mRNA
WBPaper00066232:ash-2(RNAi)_upregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4489_group_3
WBPaper00025032:cluster_50
WBPaper00025032:PAL-1_target_genes
WBPaper00029437:dcr-1_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_B
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00039866:SAM_daf-19_upregulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00045294:50uM_TBBP_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (148)
Map_infoMapIIPosition1.68645Error0.00768
PositivePositive_cloneY53C12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene