WormBase Tree Display for Gene: WBGene00013042

WBGene00013042 SMap: S_parent: Sequence: Y49E10
  Identity: Version: 4
    Name: CGC_name: cccp-1 Paper_evidence: WBPaper00045066
          Person_evidence: WBPerson625
            WBPerson567
            WBPerson2812
      Sequence_name: Y49E10.23
      Molecular_name: Y49E10.23a
        Y49E10.23a.1
        CE22238
        Y49E10.23b
        CE32078
        Y49E10.23b.1
      Other_name: unc-81 Person_evidence: WBPerson261
        CELE_Y49E10.23 Accession_evidence: NDB BX284603
      Public_name: cccp-1
    DB_info: Database: AceView gene 3N573
        WormQTL gene WBGene00013042
        WormFlux gene WBGene00013042
        NDB locus_tag CELE_Y49E10.23
        Panther gene CAEEL|WormBase=WBGene00013042|UniProtKB=Q8I0Z1
          family PTHR18911
        NCBI gene 176674
        RefSeq protein NM_067227.7
            NM_181971.6
        TREEFAM TREEFAM_ID TF328785
        TrEMBL UniProtAcc Q8I0Z1
            Q9XTT2
        UniProt_GCRP UniProtAcc Q8I0Z1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Dec 2010 12:16:25 WBPerson2970 Name_change: CGC_name: cccp-1
        3 30 Apr 2014 16:40:52 WBPerson2970 Name_change: Other_name: unc-81
        4 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00006813
      Acquires_merge: WBGene00006813
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cccp
    Reference_allele: WBVar00143762
    Allele (261)
    Legacy_information: e1122 : slightly irregular movement. ES1 ME3. NA1.
      See also e1122
      [C.elegansII] e1122 : slightly irregular movement. ES1 ME3. NA1. [CB; ZZ]
    Strain: WBStrain00004247
      WBStrain00006664
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (36)
    Structured_description: Automated_description: Enables small GTPase binding activity. Involved in dense core granule maturation and regulation of locomotion involved in locomotory behavior. Located in axon; neuronal cell body; and perinuclear region of cytoplasm. Expressed in intestine and spermatheca. Is an ortholog of human CCDC186 (coiled-coil domain containing 186). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y49E10.23a
      Y49E10.23b
    Corresponding_CDS_history: Y49E10.23:wp88
    Corresponding_transcript: Y49E10.23a.1
      Y49E10.23b.1
    Other_sequence (25)
    Associated_feature: WBsf645661
      WBsf645662
      WBsf659609
      WBsf994654
      WBsf994655
      WBsf1016204
      WBsf225911
      WBsf225912
  Experimental_info: RNAi_result (7)
    Expr_pattern: Expr11741
      Expr11743
      Expr1013507
      Expr1035798
      Expr1160462
      Expr2009754
      Expr2027994
    Drives_construct: WBCnstr00019346
      WBCnstr00019347
      WBCnstr00029772
    Construct_product: WBCnstr00019347
      WBCnstr00029772
    Microarray_results (27)
    Expression_cluster: WBPaper00024970:GABAergic_neuron_specific
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_CoreEnriched
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046121:ecdoderm_unique
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AIA
      WBPaper00061340:AIB
      WBPaper00061340:AIN
      WBPaper00061340:AVB
      WBPaper00061340:AVE
      WBPaper00061340:AVK
      WBPaper00061340:DA
      WBPaper00061340:DD
      WBPaper00061340:DVC
      WBPaper00061340:FLP
      WBPaper00061340:OLQ
      WBPaper00061340:PVP
      WBPaper00061340:PVT
      WBPaper00061340:RIS
      WBPaper00061340:RME
      WBPaper00061340:SIB
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:acy-2-F35C5.11
      WBPaper00061527:kin-29_2839-unc-9_3883
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064494:postdauer_upregulated_AWA
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065841:129_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035873:dpy-10_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
    Interaction (19)
  Map_info: Map: III Position: 17.9495 Error: 0.008502
    Positive: Positive_clone: Y49E10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 90
      Multi_point: 89
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene