WormBase Tree Display for Gene: WBGene00012450

WBGene00012450 SMap: S_parent: Sequence: Y17D7B
  Identity: Version: 1
    Name: Sequence_name: Y17D7B.2
      Molecular_name: Y17D7B.2
        Y17D7B.2.1
        CE47764
      Other_name: CELE_Y17D7B.2 Accession_evidence: NDB BX284605
      Public_name: Y17D7B.2
    DB_info: Database: AceView gene 5T269
        WormQTL gene WBGene00012450
        WormFlux gene WBGene00012450
        NDB locus_tag CELE_Y17D7B.2
        NCBI gene 189446
        RefSeq protein NM_075270.5
        TREEFAM TREEFAM_ID TF316468
        TrEMBL UniProtAcc O45909
        UniProt_GCRP UniProtAcc O45909
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (54)
    RNASeq_FPKM (74)
    Ortholog (19)
    Paralog: WBGene00007366 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00008105 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00008726 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00008922 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00016788 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00021979 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00016783 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00077593 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00012451 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019564 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercury hydroxide; methylmercuric chloride; and multi-walled carbon nanotube based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y17D7B.2
    Corresponding_CDS_history: Y17D7B.2:wp233
    Corresponding_transcript: Y17D7B.2.1
    Other_sequence: MJ04146
      ES569010.1
    Associated_feature (2)
  Experimental_info: RNAi_result: WBRNAi00055561 Inferred_automatically: RNAi_primary
      WBRNAi00020074 Inferred_automatically: RNAi_primary
      WBRNAi00097993 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016429
      Expr1159064
      Expr2007099
      Expr2025327
    Microarray_results (17)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00043945:MeHg_upregulated
      WBPaper00044030:nhr-8(hd117)_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_5
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050121:mir-60(n4947)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055137:S.maltophilia_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056284:ints-1(RNAi)_upregulated
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056471:flcn-1(ok975)_upregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057196:raga-1(ok386)_upregulated)
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:CoCl2_6hr_upregulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:AWB
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:fbxa-35-Y39A3A.3
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061636:atracurium_downregulated
      WBPaper00061651:SIA_enriched
      WBPaper00061651:SIB_enriched
      WBPaper00061823:mex-3(spr9)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062354:H.zoospora_12h_regulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064158:xpo-1(RNAi)_upregulated
      WBPaper00064375:sid-1(pk3321)_regulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064762:freezing-thaw_regulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
      WBPaper00065841:13_0
      WBPaper00065841:57_0
      WBPaper00066110:Cisplatin_upregulated_tetraploid
      WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00028789:PA14_vs_gacA_upregulated_4hr
      WBPaper00028789:PA14_vs_gacA_upregulated_8hr
      WBPaper00028789:PA14_vs_OP50_upregulated_4hr
      WBPaper00028789:PA14_vs_OP50_upregulated_8hr
      WBPaper00029437:dcr-1_upregulated
      WBPaper00036286:Pattern_D
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
    Interaction (105)
  Map_info: Positive: Positive_clone: Y17D7B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 17.7573
  Method: Gene