WormBase Tree Display for Gene: WBGene00016783
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| WBGene00016783 | SMap | S_parent | Sequence | C49G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irg-2 | Person_evidence | WBPerson3965 | |||||
| Sequence_name | C49G7.5 | ||||||||
| Molecular_name | C49G7.5 | ||||||||
| C49G7.5.1 | |||||||||
| CE08863 | |||||||||
| Other_name | CELE_C49G7.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | irg-2 | ||||||||
| DB_info | Database | AceView | gene | 5E515 | |||||
| WormQTL | gene | WBGene00016783 | |||||||
| WormFlux | gene | WBGene00016783 | |||||||
| NDB | locus_tag | CELE_C49G7.5 | |||||||
| NCBI | gene | 183619 | |||||||
| RefSeq | protein | NM_071727.6 | |||||||
| TREEFAM | TREEFAM_ID | TF316468 | |||||||
| TrEMBL | UniProtAcc | O16224 | |||||||
| UniProt_GCRP | UniProtAcc | O16224 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Jul 2009 13:51:47 | WBPerson9133 | Name_change | CGC_name | irg-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irg | ||||||||
| Allele (72) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027490 | ||||||||
| 00105961 | |||||||||
| 00105965 | |||||||||
| 00105966 | |||||||||
| Ortholog (15) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Concise_description | irg-2 encodes a novel protein, conserved amongst nematodes; irg-2 expression is induced in response to infection by virulent strains of Pseudomonas aeruginosa in a manner dependent upon the bZIP transcription factor ZIP-2, but independent of the p38 MAPK pathway. | Paper_evidence | WBPaper00035891 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Feb 2010 00:00:00 | ||||||||
| Automated_description | Involved in antibacterial innate immune response and defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C49G7.5 | |||||||
| Corresponding_transcript | C49G7.5.1 | ||||||||
| Associated_feature | WBsf231629 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029991 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042825 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115955 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097958 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012156 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026903 | ||||||||
| Expr1146805 | |||||||||
| Expr2012817 | |||||||||
| Expr2031056 | |||||||||
| Drives_construct | WBCnstr00027805 | ||||||||
| Construct_product | WBCnstr00027805 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (305) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | V | Position | -6.94787 | Error | 0.024382 | |||
| Positive | Positive_clone | C49G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028482 | ||||||||
| WBPaper00032331 | |||||||||
| WBPaper00035891 | |||||||||
| WBPaper00044217 | |||||||||
| WBPaper00046373 | |||||||||
| WBPaper00065189 | |||||||||
| WBPaper00065331 | |||||||||
| WBPaper00065749 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
