WormBase Tree Display for Gene: WBGene00011793

WBGene00011793 SMap: S_parent: Sequence: T16A9
  Identity: Version: 1
    Name: Sequence_name: T16A9.3
      Molecular_name (5)
      Other_name: CELE_T16A9.3 Accession_evidence: NDB BX284605
      Public_name: T16A9.3
    DB_info: Database: AceView gene 5O689
        WormQTL gene WBGene00011793
        WormFlux gene WBGene00011793
        NDB locus_tag CELE_T16A9.3
        NCBI gene 188549
        RefSeq protein NM_074116.4
        TREEFAM TREEFAM_ID TF316000
        TrEMBL UniProtAcc Q22522
        UniProt_GCRP UniProtAcc Q22522
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (62)
    RNASeq_FPKM (74)
    Ortholog (23)
    Paralog (16)
    Structured_description: Automated_description: Enriched in several structures, including ABaraapapaa; ABaraapppaa; XXX cell; rectal epithelial cell; and sensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; hsf-1; and clk-1 based on RNA-seq and microarray studies. Is affected by ten chemicals including rotenone; Sodium Chloride; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily; Protein of unknown function DUF1265; and Protein of unknown function (DUF1265). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T16A9.3
    Corresponding_CDS_history: T16A9.3:wp138
      T16A9.3:wp201
    Corresponding_transcript: T16A9.3.1
      T16A9.3.2
      T16A9.3.3
    Other_sequence: FG647762.1
    Associated_feature: WBsf662070
      WBsf1001960
      WBsf232892
  Experimental_info: RNAi_result: WBRNAi00053404 Inferred_automatically: RNAi_primary
      WBRNAi00035604 Inferred_automatically: RNAi_primary
      WBRNAi00018760 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019251
      Expr1156978
      Expr2006205
      Expr2024422
    Drives_construct: WBCnstr00030382
    Construct_product: WBCnstr00030382
    Microarray_results (16)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053771:up_at_3h-NaCl
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056446:hsb-1(cg116)_downregulated
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061340:K_Kprime
      WBPaper00061340:NSM_parent
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:Y40H4A.2-ZK1053.2
      WBPaper00061651:XXX_enriched
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065158:AFD_enriched
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:4_0
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:40_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4489_group_21
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00040963:TA300_up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction: WBInteraction000151339
      WBInteraction000175940
      WBInteraction000213511
      WBInteraction000262932
      WBInteraction000263090
      WBInteraction000266391
      WBInteraction000366972
      WBInteraction000392439
      WBInteraction000399877
      WBInteraction000567542
  Map_info: Positive: Positive_clone: T16A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.20027
  Method: Gene