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WormBase Tree Display for Gene: WBGene00011513

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Name Class

WBGene00011513SMapS_parentSequenceT06C12
IdentityVersion2
NameCGC_namefbxa-197Person_evidenceWBPerson655
Sequence_nameT06C12.4
Molecular_nameT06C12.4
T06C12.4.1
CE16354
Other_nameCELE_T06C12.4Accession_evidenceNDBBX284605
Public_namefbxa-197
DB_infoDatabaseAceViewgene5Q345
WormQTLgeneWBGene00011513
WormFluxgeneWBGene00011513
NDBlocus_tagCELE_T06C12.4
PanthergeneCAEEL|WormBase=WBGene00011513|UniProtKB=O18043
familyPTHR23015
NCBIgene188165
RefSeqproteinNM_074562.4
TREEFAMTREEFAM_IDTF321294
TrEMBLUniProtAccO18043
UniProt_GCRPUniProtAccO18043
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (30)
RNASeq_FPKM (74)
Contained_in_operonCEOP5535
Ortholog (34)
Paralog (222)
Structured_descriptionAutomated_descriptionEnriched in several structures, including I5 neuron; cholinergic neurons; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including methylmercuric chloride; manganese chloride; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST06C12.4
Corresponding_transcriptT06C12.4.1
Other_sequenceCBC01996_1
CBC02683_1
Associated_featureWBsf662137
WBsf233052
Experimental_infoRNAi_resultWBRNAi00052628Inferred_automaticallyRNAi_primary
WBRNAi00062357Inferred_automaticallyRNAi_primary
WBRNAi00035257Inferred_automaticallyRNAi_primary
WBRNAi00018281Inferred_automaticallyRNAi_primary
Expr_patternExpr1026732
Expr1156233
Expr2011511
Expr2029748
Drives_constructWBCnstr00030597
Construct_productWBCnstr00030597
Microarray_results (15)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045521:Gender_Neutral
WBPaper00045861:wdr-5(ok1417)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:lin-15B(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056284:ints-11(RNAi)_upregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060886:met-2(n4256)_downregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:T22D1.5-inx-14
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:rrf-1(pk1417)_downregulated
WBPaper00030839:Embryo_A_Class
WBPaper00035873:dpy-9_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00037611:RNP-8-associated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_E
[cgc6390]:intrinsic
Interaction (58)
Map_infoMapVPosition9.02871Error0.002877
PositivePositive_cloneT06C12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene