WormBase Tree Display for Gene: WBGene00011079

WBGene00011079 SMap: S_parent: Sequence: R07B1
  Identity: Version: 2
    Name: Sequence_name: R07B1.7
      Molecular_name: R07B1.7
        R07B1.7.1
        CE52883
      Other_name: CELE_R07B1.7 Accession_evidence: NDB BX284606
      Public_name: R07B1.7
    DB_info: Database: AceView gene XK487
        WormQTL gene WBGene00011079
        WormFlux gene WBGene00011079
        NDB locus_tag CELE_R07B1.7
        Panther gene CAEEL|WormBase=WBGene00011079|UniProtKB=Q09421
          family PTHR21629
        NCBI gene 187648
        RefSeq protein NM_077254.4
        SwissProt UniProtAcc Q09421
        UniProt_GCRP UniProtAcc Q09421
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Sep 2008 10:58:18 WBPerson1983 Event: Split_into: WBGene00138711
      Split_into: WBGene00138711
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01786889
      WBVar02069039
      WBVar01177129
      WBVar01177130
      WBVar02139911
      WBVar01888010
      WBVar01888011
      WBVar01498960
      WBVar01500067
    RNASeq_FPKM (74)
    Contained_in_operon: CEOPX180
      CEOP2738
    Ortholog (13)
    Paralog: WBGene00011077 Caenorhabditis elegans From_analysis: Panther
      WBGene00011078 Caenorhabditis elegans From_analysis: Panther
      WBGene00012571 Caenorhabditis elegans From_analysis: Panther
      WBGene00011877 Caenorhabditis elegans From_analysis: Panther
      WBGene00019306 Caenorhabditis elegans From_analysis: Panther
      WBGene00012570 Caenorhabditis elegans From_analysis: Panther
      WBGene00016276 Caenorhabditis elegans From_analysis: Panther
      WBGene00138711 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in OLL; PVD; and coelomocyte based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including methylmercury hydroxide; multi-walled carbon nanotube; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: C6 domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B1.7
    Corresponding_CDS_history: R07B1.7:wp194
      R07B1.7:wp268
    Corresponding_transcript: R07B1.7.1
    Associated_feature: WBsf1006557
  Experimental_info: RNAi_result: WBRNAi00051416 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020570
      Expr1155106
      Expr2005442
      Expr2023663
    Microarray_results: SMD_R07B1.7
      186791_at
      Aff_R07B1.7
      GPL14144_R07B1.7_331-390_0.970_1_A
      GPL19516_CGZ0031203
      GPL21109_R07B1.7
      GPL3518_CE01633
      GPL8673_R07B1_7P00121
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:coelomocytes_embryo_SelectivelyEnriched
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00043945:MeHg_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:Coelomocyte
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:58_0
      WBPaper00065841:58_1
      WBPaper00065841:105_0
      WBPaper00065841:125_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_7
      WBPaper00031003:hlh_1_enriched
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
      [cgc6390]:male_sex-enriched
    Interaction (6)
  Map_info: Positive: Positive_clone: R07B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 1.73042
  Method: Gene