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WormBase Tree Display for Gene: WBGene00010993

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Name Class

WBGene00010993SMapS_parentSequenceR03E1
IdentityVersion2
NameCGC_namevha-20Person_evidenceWBPerson171
Sequence_nameR03E1.2
Molecular_nameR03E1.2
R03E1.2.1
CE18902
Other_nameCELE_R03E1.2Accession_evidenceNDBBX284606
Public_namevha-20
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
209 Jan 2015 16:33:20WBPerson2970Name_changeCGC_namevha-20
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
Allele (37)
StrainWBStrain00051438
RNASeq_FPKM (74)
GO_annotation (16)
Contained_in_operonCEOPX128
Ortholog (36)
ParalogWBGene00020500Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable signaling receptor activity. Involved in nematode larval development and regulation of intracellular pH. Located in apical plasma membrane. Expressed in amphid neurons. Human ortholog(s) of this gene implicated in X-linked parkinsonism-spasticity syndrome; congenital disorder of glycosylation type II; and syndromic X-linked intellectual disability Hedera type. Is an ortholog of human ATP6AP2 (ATPase H+ transporting accessory protein 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050571Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
DOID:0112105Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
DOID:0060806Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18305)
Molecular_infoCorresponding_CDSR03E1.2
Corresponding_transcriptR03E1.2.1
Other_sequence (54)
Associated_featureWBsf1007839
WBsf1007840
WBsf238202
Experimental_infoRNAi_resultWBRNAi00091183Inferred_automaticallyRNAi_primary
WBRNAi00091182Inferred_automaticallyRNAi_primary
WBRNAi00051179Inferred_automaticallyRNAi_primary
WBRNAi00026015Inferred_automaticallyRNAi_primary
WBRNAi00090872Inferred_automaticallyRNAi_primary
WBRNAi00009029Inferred_automaticallyRNAi_primary
WBRNAi00034558Inferred_automaticallyRNAi_primary
Expr_patternExpr12676
Expr12677
Expr1028269
Expr1034822
Expr1154886
Expr2017987
Expr2036123
Drives_constructWBCnstr00022597
WBCnstr00022598
WBCnstr00022599
WBCnstr00031010
Construct_productWBCnstr00022597
WBCnstr00022598
WBCnstr00022599
WBCnstr00031010
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045521:Gender_Neutral
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:intestine_enriched
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053814:15C_downregulated_PY79
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057288:Cold_downregulated_protein
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059895:wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061340:ADA_ADE_grandparent
WBPaper00061340:Coelomocyte
WBPaper00061340:Excretory_cell
WBPaper00061341:28C_48h_downregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:R03E1.2_7363-ucr-2.1
WBPaper00061651:VC_4_5_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064716:paraquat_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065841:79_1
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
WBPaper00065993:glp-1(e2141)_upregulated
cgc4386_cluster_3_4
cgc4489_group_8
WBPaper00025032:cluster_107
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_A
WBPaper00026980:intestine_enriched
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00032165:A_to_C_transit_increased
WBPaper00034757:down_by_oxidative_stress
WBPaper00035873:dpy-10_regulated
WBPaper00035892:Y.pestis_regulated
WBPaper00036286:Pattern_C
WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
WBPaper00037695:WC_5-day
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040963:TA100_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_downregulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_C
Interaction (43)
Map_info (3)
ReferenceWBPaper00024639
WBPaper00038491
WBPaper00048272
WBPaper00049011
WBPaper00055090
WBPaper00058870
WBPaper00065140
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene