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WormBase Tree Display for Gene: WBGene00010089

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Name Class

WBGene00010089SMapS_parentSequenceF55B12
IdentityVersion2
NameCGC_namehpo-31Paper_evidenceWBPaper00038231
Person_evidenceWBPerson26
Sequence_nameF55B12.4
Molecular_nameF55B12.4
F55B12.4.1
CE26815
F55B12.4.2
Other_nameCELE_F55B12.4Accession_evidenceNDBBX284605
Public_namehpo-31
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Apr 2011 13:31:47WBPerson2970Name_changeCGC_namehpo-31
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhpo
Allele (31)
StrainWBStrain00049382
RNASeq_FPKM (74)
GO_annotation (11)
Contained_in_operonCEOP5404
Ortholog (36)
Structured_descriptionAutomated_descriptionPredicted to enable tRNA binding activity. Predicted to be involved in mitochondrial tRNA 3'-end processing and tRNA 3'-terminal CCA addition. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Is an ortholog of human TRNT1 (tRNA nucleotidyl transferase 1).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080209Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17341)
Molecular_infoCorresponding_CDSF55B12.4
Corresponding_CDS_historyF55B12.4:wp42
Corresponding_transcriptF55B12.4.1
F55B12.4.2
Other_sequence (31)
Associated_featureWBsf662056
Experimental_infoRNAi_result (12)
Expr_patternExpr1013745
Expr1034403
Expr1152241
Expr2012571
Expr2030808
Drives_constructWBCnstr00031676
Construct_productWBCnstr00031676
Microarray_results (23)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-4(RNAi)_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061340:I1_parent
WBPaper00061340:Neuroblast_ALM_BDU
WBPaper00061340:Parent_of_MI_pm1DR
WBPaper00061340:PVQ_parent
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:F54E7.8-orc-5_6376
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_6
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_H
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:intrinsic
Interaction (14)
Map_infoMapVPosition5.64395Error0.014982
PositivePositive_cloneF55B12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00061983
WBPaper00063971
WBPaper00064934
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene