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WormBase Tree Display for Gene: WBGene00009915

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Name Class

WBGene00009915SMapS_parentSequenceF52A8
IdentityVersion1
NameSequence_nameF52A8.1
Molecular_nameF52A8.1
F52A8.1.1
CE05908
Other_nameCELE_F52A8.1Accession_evidenceNDBBX284601
Public_nameF52A8.1
DB_infoDatabaseAceViewgene1H895
WormQTLgeneWBGene00009915
WormFluxgeneWBGene00009915
NDBlocus_tagCELE_F52A8.1
PanthergeneCAEEL|WormBase=WBGene00009915|UniProtKB=Q20637
familyPTHR34149
NCBIgene172482
RefSeqproteinNM_001383333.2
TREEFAMTREEFAM_IDTF319571
TrEMBLUniProtAccQ20637
UniProt_GCRPUniProtAccQ20637
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (10)
RNASeq_FPKM (74)
GO_annotation00068630
Ortholog (28)
ParalogWBGene00007474Caenorhabditis elegansFrom_analysisPanther
WBGene00012759Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044477Caenorhabditis elegansFrom_analysisTreeFam
WBGene00011220Caenorhabditis elegansFrom_analysisPanther
WBGene00194747Caenorhabditis elegansFrom_analysisPanther
WBGene00018348Caenorhabditis elegansFrom_analysisPanther
WBGene00010598Caenorhabditis elegansFrom_analysisPanther
WBGene00194733Caenorhabditis elegansFrom_analysisPanther
WBGene00022698Caenorhabditis elegansFrom_analysisPanther
WBGene00044756Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionPredicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF52A8.1
Corresponding_transcriptF52A8.1.1
Other_sequenceCBC00541_1
CRC02380_1
CR01822
EX911750.1
PPC00761_1
HBC11157_1
Oden_isotig13444
Oden_isotig13445
Associated_featureWBsf656506
WBsf976779
WBsf976780
WBsf976781
WBsf976782
WBsf976783
WBsf976784
WBsf984144
WBsf217995
WBsf217996
Experimental_infoRNAi_resultWBRNAi00047905Inferred_automaticallyRNAi_primary
WBRNAi00081096Inferred_automaticallyRNAi_primary
Expr_patternExpr1010347
Expr1034316
Expr1151734
Expr2003967
Expr2022188
Drives_constructWBCnstr00031820
Construct_productWBCnstr00031820
Microarray_results (20)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00032425:up_in_alg-1
WBPaper00032425:up_in_rde-4
WBPaper00032528:L3_enriched
WBPaper00038289:oocyte_protein
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Oogenic
WBPaper00045774:clk-1_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050182:lmn-1(L535P)_downregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_specific
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059471:EGL-43_interacting
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:C28H8.4-ZK418.5_10918
WBPaper00061651:AMso_enriched
WBPaper00061651:AVA_enriched
WBPaper00061651:Spermatheca_enriched
WBPaper00061651:VC_enriched
WBPaper00061740:mir-1(gk276)_upregulated_protein
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00064841:tent-5(tm3504)_upregulated_protein
WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
WBPaper00065120:body-muscle-transcriptome
cgc4386_cluster_4_5
cgc4489_group_7
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032948:FedUp
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035905:FBF-1_Associated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00047070:N2_starvation_downregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
InteractionWBInteraction000286484
WBInteraction000294552
WBInteraction000326723
WBInteraction000344973
WBInteraction000349203
WBInteraction000430220
WBInteraction000453302
WBInteraction000559300
Map_infoPositivePositive_cloneF52A8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI1.90843
ReferenceWBPaper00034662
MethodGene