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WormBase Tree Display for Gene: WBGene00009879

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Name Class

WBGene00009879SMapS_parentSequenceF49C12
IdentityVersion2
NameCGC_namenemt-1Person_evidenceWBPerson6498
Sequence_nameF49C12.10
Molecular_nameF49C12.10
F49C12.10.1
CE03370
Other_nameCELE_F49C12.10Accession_evidenceNDBBX284604
Public_namenemt-1
DB_infoDatabaseAceViewgene4K82
WormQTLgeneWBGene00009879
WormFluxgeneWBGene00009879
NDBlocus_tagCELE_F49C12.10
PanthergeneCAEEL|WormBase=WBGene00009879|UniProtKB=Q20587
familyPTHR42912
NCBIgene177754
RefSeqproteinNM_069232.3
TREEFAMTREEFAM_IDTF343434
TrEMBLUniProtAccQ20587
UniProt_GCRPUniProtAccQ20587
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Jan 2024 23:28:21WBPerson51134Name_changeCGC_namenemt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnemt
Allele (16)
RNASeq_FPKM (74)
GO_annotation00068464
00068465
00068466
00117436
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to enable methyltransferase activity. Predicted to be involved in methylation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00032510Inferred_automaticallyRNAi_primary
WBRNAi00047796Inferred_automaticallyRNAi_primary
WBRNAi00025554Inferred_automaticallyRNAi_primary
WBRNAi00015283Inferred_automaticallyRNAi_primary
WBRNAi00064693Inferred_automaticallyRNAi_primary
WBRNAi00076449Inferred_automaticallyRNAi_primary
WBRNAi00064671Inferred_automaticallyRNAi_primary
WBRNAi00008820Inferred_automaticallyRNAi_primary
Expr_patternExpr1026384
Expr1151631
Expr2003907
Expr2022129
Drives_constructWBCnstr00031850
Construct_productWBCnstr00031850
Microarray_results (19)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044316:CH3HgCl_2.0uM_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00045521:Gender_Neutral
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053810:sod-2(ok1030)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059426:Ag-nanoparticles_downregulated
WBPaper00059490:dcr-1(m9375)_downregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00061340:CAN
WBPaper00061358:ferulic-acid_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:172183_at-176110_at
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061651:CAN_enriched
WBPaper00062146:MOG-7-degron_1h_regulated
WBPaper00062193:daf-16(RNAi)_upregulated
WBPaper00062197:mec-8_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065158:25C_vs_15C_downregulated_AFD
WBPaper00065841:69_0
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_2
cgc4489_group_17
WBPaper00005124:estrogen_10-5M_regulated
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027111:eri-1(mg366)_upregulated
WBPaper00027111:rde-3(ne298)_upregulated
WBPaper00027111:rrf-2(ok210)_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00036286:Pattern_G
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00051387:Triclosan_downregulated
WBPaper00053236:Starvation_regulated_N2
Interaction (11)
Map_infoMapIVPosition4.1627
PositivePositive_cloneF49C12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene