WormBase Tree Display for Gene: WBGene00009604

WBGene00009604 SMap: S_parent: Sequence: F40G12
  Identity: Version: 1
    Name: Sequence_name: F40G12.9
      Molecular_name: F40G12.9
        F40G12.9.1
        CE42468
      Other_name: CELE_F40G12.9 Accession_evidence: NDB BX284605
      Public_name: F40G12.9
    DB_info: Database: AceView gene 5O763
        WormQTL gene WBGene00009604
        WormFlux gene WBGene00009604
        NDB locus_tag CELE_F40G12.9
        NCBI gene 185569
        RefSeq protein NM_074135.5
        TREEFAM TREEFAM_ID TF343615
        TrEMBL UniProtAcc Q20251
        UniProt_GCRP UniProtAcc Q20251
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (12)
    RNASeq_FPKM (74)
    Ortholog (33)
    Paralog: WBGene00013090 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022445 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00017246 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022440 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022439 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00017247 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00271827 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is affected by several genes including daf-2; eat-2; and alg-1 based on microarray; tiling array; and RNA-seq studies. Is affected by six chemicals including allantoin; Sirolimus; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: CC domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00073087 Inferred_automatically: RNAi_primary
      WBRNAi00046902 Inferred_automatically: RNAi_primary
      WBRNAi00032051 Inferred_automatically: RNAi_primary
      WBRNAi00014685 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022785
      Expr1150769
      Expr2003550
      Expr2021767
    Drives_construct: WBCnstr00032065
    Construct_product: WBCnstr00032065
    Microarray_results (14)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033070:Elbe_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00041071:spe-44_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060886:met-2(n4256)_downregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00060886:spr-5(by101)_downregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00036286:Pattern_C
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00045673:colistin_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
    Interaction (26)
  Map_info: Positive: Positive_clone: F40G12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.2254
  Reference: WBPaper00042257
    WBPaper00055090
  Method: Gene