WormBase Tree Display for Gene: WBGene00009589

WBGene00009589 SMap: S_parent: Sequence: F40F11
  Identity: Version: 2
    Name: CGC_name: spe-36 Person_evidence: WBPerson32548
      Sequence_name: F40F11.4
      Molecular_name: F40F11.4
        F40F11.4.1
        CE39499
      Other_name: CELE_F40F11.4 Accession_evidence: NDB BX284604
      Public_name: spe-36
    DB_info: Database: AceView gene 4M350
        WormQTL gene WBGene00009589
        WormFlux gene WBGene00009589
        NDB locus_tag CELE_F40F11.4
        NCBI gene 185548
        RefSeq protein NM_069782.6
        TREEFAM TREEFAM_ID TF344019
        TrEMBL UniProtAcc Q20209
        UniProt_GCRP UniProtAcc Q20209
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spe
    Allele (49)
    RNASeq_FPKM (74)
    GO_annotation: 00117234
    Ortholog (22)
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F40F11.4
    Corresponding_CDS_history: F40F11.4:wp152
    Corresponding_transcript: F40F11.4.1
    Other_sequence: CJC13967_1
      AS17706
      PT02782
    Associated_feature: WBsf668350
  Experimental_info: RNAi_result: WBRNAi00032025 Inferred_automatically: RNAi_primary
      WBRNAi00046852 Inferred_automatically: RNAi_primary
      WBRNAi00008772 Inferred_automatically: RNAi_primary
      WBRNAi00014649 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16475
      Expr16476
      Expr1022259
      Expr1150723
      Expr2003530
      Expr2021747
    Drives_construct: WBCnstr00032078
    Construct_product: WBCnstr00032078
      WBCnstr00043067
    Microarray_results (18)
    Expression_cluster: WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00041071:spe-44_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045774:clk-1_downregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053771:up_at_3h-NaCl
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:I1_parent
      WBPaper00061340:NSM_parent
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:srj-42-srw-113
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065392:Lb.delbrueckii_downregulated
      WBPaper00065392:Lb.reuteri_downregulated
      WBPaper00065841:13_1
      WBPaper00065841:61_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066110:Cisplatin_downregulated_tetraploid
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_2
      cgc4489_group_18
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00036286:Pattern_E
      WBPaper00040858:eQTL_regulated_old
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction (71)
  Map_info: Map: IV Position: 5.01807
    Positive: Positive_clone: F40F11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00057804
    WBPaper00065756
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene