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WormBase Tree Display for Gene: WBGene00008979

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Name Class

WBGene00008979SMapS_parentSequenceF20D1
IdentityVersion2
NameCGC_nameslc-25A18.1
Sequence_nameF20D1.9
Molecular_nameF20D1.9
F20D1.9.1
CE47961
Other_nameCELE_F20D1.9Accession_evidenceNDBBX284606
Public_nameslc-25A18.1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classslc
Allele (37)
RNASeq_FPKM (74)
GO_annotation (11)
Contained_in_operonCEOPX132
Ortholog (44)
Paralog (35)
Structured_descriptionAutomated_descriptionPredicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 3. Is an ortholog of human SLC25A18 (solute carrier family 25 member 18) and SLC25A22 (solute carrier family 25 member 22).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080440Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:19954)
Molecular_infoCorresponding_CDSF20D1.9
Corresponding_CDS_historyF20D1.9:wp234
Corresponding_transcriptF20D1.9.1
Other_sequence (69)
Associated_featureWBsf1008064
WBsf238279
Experimental_infoRNAi_resultWBRNAi00013618Inferred_automaticallyRNAi_primary
WBRNAi00076320Inferred_automaticallyRNAi_primary
WBRNAi00094935Inferred_automaticallyRNAi_primary
WBRNAi00045100Inferred_automaticallyRNAi_primary
WBRNAi00023428Inferred_automaticallyRNAi_primary
WBRNAi00117467Inferred_automaticallyRNAi_primary
WBRNAi00024003Inferred_automaticallyRNAi_primary
WBRNAi00023715Inferred_automaticallyRNAi_primary
WBRNAi00031169Inferred_automaticallyRNAi_primary
WBRNAi00023203Inferred_automaticallyRNAi_primary
Expr_patternChronogram1183
Expr5804
Expr14638
Expr1026344
Expr1033909
Expr1149050
Expr2002780
Expr2020998
Drives_constructWBCnstr00004085
WBCnstr00032549
WBCnstr00041189
Construct_productWBCnstr00032549
WBCnstr00041189
Microarray_results (18)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032976:non_compensated_genes
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_CoreEnriched
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056284:ints-4(RNAi)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059605:MUT-16_interacting
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059895:wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:dhs-28_22199-acs-14
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064716:paraquat_downregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4386_cluster_1_5
cgc4489_group_9
WBPaper00025032:cluster_43
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027342:alpha-Synuclein(WT)_upregulated
WBPaper00032062:age_regulated_genes
WBPaper00036286:Pattern_C
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_C
Interaction (51)
Map_infoMapXPosition21.7444
PositivePositive_cloneF20D1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00059575
WBPaper00061547
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene