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WormBase Tree Display for Gene: WBGene00008459

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Name Class

WBGene00008459SMapS_parentSequenceE02H1
IdentityVersion2
Name (5)
DB_infoDatabaseAceViewgene2J889
WormQTLgeneWBGene00008459
WormFluxgeneWBGene00008459
NDBlocus_tagCELE_E02H1.8
PanthergeneCAEEL|WormBase=WBGene00008459|UniProtKB=Q7YX52
familyPTHR33618
NCBIgene3565796
RefSeqproteinNM_001026887.4
TREEFAMTREEFAM_IDTF300292
TrEMBLUniProtAccQ7YX52
UniProt_GCRPUniProtAccQ7YX52
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
210 Jun 2011 16:50:10WBPerson2970Name_changeCGC_namemrpl-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmrpl
Allele (15)
RNASeq_FPKM (74)
GO_annotation00082826
00082827
Contained_in_operonCEOP2436
Ortholog (32)
ParalogWBGene00021920
Structured_descriptionAutomated_descriptionPredicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL53 (mitochondrial ribosomal protein L53).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSE02H1.8
Corresponding_transcriptE02H1.8.1
Other_sequence (23)
Associated_featureWBsf221908
Experimental_infoRNAi_resultWBRNAi00007974Inferred_automaticallyRNAi_primary
WBRNAi00012646Inferred_automaticallyRNAi_primary
Expr_patternExpr1028418
Expr1033685
Expr1147594
Expr2013729
Expr2031964
Drives_constructWBCnstr00032948
Construct_productWBCnstr00032948
Microarray_results (14)
Expression_clusterWBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038118:stress_upregulated_N2
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040285:H2S_24hr_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_4
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00041606:CE_X.nematophila_regulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc6390]:intrinsic
InteractionWBInteraction000541548
WBInteraction000556463
Map_infoMapIIPosition1.61607Error4e-05
PositivePositive_cloneE02H1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00065394
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene