WormBase Tree Display for Gene: WBGene00008294

WBGene00008294 SMap: S_parent: Sequence: C54C8
  Identity: Version: 2
    Name: CGC_name: clec-11 Person_evidence: WBPerson655
      Sequence_name: C54C8.7
      Molecular_name: C54C8.7
        C54C8.7.1
        CE08970
      Other_name: CELE_C54C8.7 Accession_evidence: NDB BX284601
      Public_name: clec-11
    DB_info: Database: AceView gene 1N52
        WormQTL gene WBGene00008294
        WormFlux gene WBGene00008294
        NDB locus_tag CELE_C54C8.7
        Panther gene CAEEL|WormBase=WBGene00008294|UniProtKB=O17705
          family PTHR22991
        NCBI gene 183773
        RefSeq protein NM_060761.2
        TREEFAM TREEFAM_ID TF351663
        TrEMBL UniProtAcc O17705
        UniProt_GCRP UniProtAcc O17705
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 29 Apr 2005 13:53:45 WBPerson2970 Name_change: CGC_name: clec-11
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (62)
    RNASeq_FPKM (74)
    Ortholog (50)
    Paralog (53)
    Structured_description: Automated_description: Is affected by several genes including eat-2; sir-2.1; and sek-1 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including methylmercuric chloride; Tunicamycin; and Alovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C54C8.7
    Corresponding_transcript: C54C8.7.1
    Other_sequence: CR04412
      CRC00982_1
    Associated_feature: WBsf985565
      WBsf1010896
  Experimental_info: RNAi_result: WBRNAi00030132 Inferred_automatically: RNAi_primary
      WBRNAi00043124 Inferred_automatically: RNAi_primary
      WBRNAi00003224 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016502
      Expr1147093
      Expr2010062
    Microarray_results (16)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00044316:CH3HgCl_2.0uM_upregulated
      WBPaper00045050:csr-1(hypomorph)_upregulated
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00061653:alh-4(hj221)_upregulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062440:crh-1(syb385)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065315:mating_downregulated_Day2-7
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_5
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00055899:2,4-Dinitroanisole_regulated
    Interaction (36)
  Map_info: Map: I Position: 13.225 Error: 0.000561
    Positive: Positive_clone: C54C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene