WormBase Tree Display for Gene: WBGene00007662

WBGene00007662 SMap: S_parent: Sequence: C17H1
  Identity: Version: 2
    Name (5)
    DB_info: Database: AceView gene 1N711
        WormQTL gene WBGene00007662
        WormFlux gene WBGene00007662
        NDB locus_tag CELE_C17H1.9
        NCBI gene 3565285
        RefSeq mRNA NM_001025832.3
          protein NP_001021003.1
            NM_001025832.4
        TREEFAM TREEFAM_ID TF322878
        UniProt UniProtAcc Q7YX94
        TrEMBL UniProtAcc Q7YX94
        UniProt_GCRP UniProtAcc Q7YX94
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (47)
    RNASeq_FPKM (74)
    Ortholog: Sp34_50055100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2654 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00007656 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007658 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044711 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
            WormBase-Compara
      WBGene00009061 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044722 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00013294 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016281 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044237 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AIZ; AVG; dopaminergic neurons; and mechanosensory neurons based on tiling array and single-cell RNA-seq studies. Is affected by several genes including skn-1; eat-2; and elt-2 based on tiling array; microarray; and RNA-seq studies. Is affected by eleven chemicals including Mercuric Chloride; Zidovudine; and allantoin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C17H1.9
    Corresponding_transcript: C17H1.9.1
    Associated_feature: WBsf985776
      WBsf985777
      WBsf985778
      WBsf985779
      WBsf1011014
      WBsf1011015
      WBsf218680
  Experimental_info: Expr_pattern: Expr1144899
      Expr2014714
      Expr2032949
    Drives_construct: WBCnstr00033570
    Construct_product: WBCnstr00033570
    Microarray_results: A_12_P112086
      GPL19516_CGZ0005181
      GPL21109_C17H1.28
      GPL21109_C17H1.9
      GPL8304_CE_WBGene00007662_A
      GPL8304_CE_WBGene00007662_B
      GPL8673_C17H1_9P00761
      GPL8673_C17H1_9P00843
      GPL8673_C17H1_9P01003
    Expression_cluster: WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00049484:elt-2(RNAi)_upregulated_L4
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059426:Ag-nanoparticles_downregulated
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00060886:spr-5(by101)_downregulated
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061340:ADE
      WBPaper00061340:AIZ
      WBPaper00061340:AVG
      WBPaper00061340:FLP
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061651:ADE_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00063926:chd-7(gk290)_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065841:36_3
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00045673:colistin_upregulated
  Map_info: Map: I Position: 17.2211
    Positive: Positive_clone: C17H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene