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WormBase Tree Display for Gene: WBGene00006375

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Name Class

WBGene00006375EvidenceCGC_data_submission
SMapS_parentSequenceF26D2
IdentityVersion2
NameCGC_namesyp-1Person_evidenceWBPerson1547
Sequence_nameF26D2.2
Molecular_nameF26D2.2
F26D2.2.1
CE33925
Other_nameCELE_F26D2.2Accession_evidenceNDBBX284605
Public_namesyp-1
DB_infoDatabase (9)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
210 Jun 2014 12:12:12WBPerson1983EventAcquires_mergeWBGene00043289
Acquires_mergeWBGene00043289
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyp
Allele (63)
StrainWBStrain00000290
WBStrain00034785
WBStrain00034786
WBStrain00051119
RNASeq_FPKM (74)
GO_annotation00020833
00020834
00020835
00020836
00020837
00020838
00020839
00020840
00020841
OrthologWBGene00057339Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00025487Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WBGene00127788Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
chrV_pilon.g17139Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionsyp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes.Paper_evidenceWBPaper00005462
Curator_confirmedWBPerson1843
Date_last_updated16 Mar 2009 00:00:00
Automated_descriptionEnables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF26D2.2
Corresponding_CDS_historyF26D2.2:wp100
Corresponding_transcriptF26D2.2.1
Other_sequenceGR977571.1
SC00265
CBC02102_1
CBC06172_1
CJC04954_1
Associated_featureWBsf233110
Experimental_infoRNAi_result (31)
Expr_pattern (11)
Drives_constructWBCnstr00034384
Construct_productWBCnstr00016721
WBCnstr00034384
Antibody (22)
Microarray_results (30)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032031:DConiospora_upregulated_cDNA_24h
WBPaper00032425:up_in_lin-35
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:rising_dev_expression
WBPaper00044760:germline_specific
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00045420:fertilization_upregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048611:MnCl2_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050193:lsm-1(tm3585)_upregulated_L3
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057288:iff-1(RNAi)_upregulated_protein
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060886:met-2(n4256)_upregulated
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061274:hypergravity_10xg_upregulated
WBPaper00061340:AIZ
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:C16A11.5-C16C8.13
WBPaper00062056:dpl-1(n2994)_upregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062056:met-2(n4256)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00063924:PARG-1_interacting
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
cgc4386_cluster_6_1
cgc4489_group_1
WBPaper00025032:cluster_3
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_B
WBPaper00037695:LD_3-day
WBPaper00038427:lin-54_embryo_changed
WBPaper00038427:lin-54_germline_changed
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00053688:E.faecalis_upregulated
WBPaper00053688:E.faecium_upregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_3
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:intrinsic
Interaction (126)
Map_infoMapVPosition10.0424Error0.001284
PositivePositive_cloneF26D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4776
5344
Pseudo_map_position
Reference (88)
RemarkSequence connection from [Villeneuve AM]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
MethodGene