WormBase Tree Display for Gene: WBGene00005399

WBGene00005399 SMap: S_parent: Sequence: D1054
  Identity: Version: 1
    Name: CGC_name: srh-184 Person_evidence: WBPerson522
      Sequence_name: D1054.12
      Molecular_name: D1054.12
        D1054.12.1
        CE34478
      Other_name: CELE_D1054.12 Accession_evidence: NDB BX284605
      Public_name: srh-184
    DB_info: Database: AceView gene 5L274
        WormQTL gene WBGene00005399
        WormFlux gene WBGene00005399
        NDB locus_tag CELE_D1054.12
        Panther gene CAEEL|WormBase=WBGene00005399|UniProtKB=Q18952
          family PTHR22941
        NCBI gene 183918
        RefSeq protein NM_073359.3
        TrEMBL UniProtAcc Q18952
        UniProt_GCRP UniProtAcc Q18952
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:38 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srh
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00062932
    Ortholog (25)
    Paralog (299)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D1054.12
    Corresponding_CDS_history: D1054.12:wp104
    Corresponding_transcript: D1054.12.1
  Experimental_info: RNAi_result: WBRNAi00012531 Inferred_automatically: RNAi_primary
      WBRNAi00043387 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016923
      Expr1147374
      Expr2016409
      Expr2034620
    Drives_construct: WBCnstr00035000
    Construct_product: WBCnstr00035000
    Microarray_results (18)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00035211:age-1_vs_N2_downregulated
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044760:germline_specific
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00061340:ADL
      WBPaper00061340:AIY
      WBPaper00061340:RID
      WBPaper00061340:RIM
      WBPaper00061340:XXX
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:sri-19-glr-8
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00065841:47_1
      WBPaper00065841:91_0
      WBPaper00028789:pmk-1_upregulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction (58)
  Map_info: Map: V Position: 2.77963 Error: 0.002554
    Positive: Positive_clone: D1054 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003921
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene