WormBase Tree Display for Gene: WBGene00005258

WBGene00005258 SMap: S_parent: Sequence: M02H5
  Identity: Version: 1
    Name: CGC_name: srh-35 Person_evidence: WBPerson522
      Sequence_name: M02H5.11
      Molecular_name: M02H5.11
        M02H5.11.1
        CE25949
      Other_name: CELE_M02H5.11 Accession_evidence: NDB BX284605
      Public_name: srh-35
    DB_info: Database: AceView gene 5A924
        WormQTL gene WBGene00005258
        WormFlux gene WBGene00005258
        NDB locus_tag CELE_M02H5.11
        Panther gene CAEEL|WormBase=WBGene00005258|UniProtKB=Q966I3
          family PTHR47922
        NCBI gene 191854
        RefSeq protein NM_070804.2
        TREEFAM TREEFAM_ID TF320416
        TrEMBL UniProtAcc Q966I3
        UniProt_GCRP UniProtAcc Q966I3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srh
    Allele (80)
    RNASeq_FPKM (74)
    GO_annotation: 00090968
    Ortholog (19)
    Paralog (292)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M02H5.11
    Corresponding_transcript: M02H5.11.1
    Associated_feature (2)
  Experimental_info: RNAi_result: WBRNAi00017139 Inferred_automatically: RNAi_primary
      WBRNAi00070642 Inferred_automatically: RNAi_primary
      WBRNAi00070643 Inferred_automatically: RNAi_primary
      WBRNAi00050833 Inferred_automatically: RNAi_primary
      WBRNAi00103459 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024102
      Expr1154527
      Expr2016486
      Expr2034687
    Drives_construct: WBCnstr00035083
    Construct_product: WBCnstr00035083
    Microarray_results (15)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032031:DConiospora_upregulated_OligoArray_24h
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00045774:clk-1_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00061340:M4_parent
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:srj-21-srh-32
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00065841:30_4
      WBPaper00065841:41_0
      WBPaper00065841:80_0
      WBPaper00065841:123_0
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_11
      WBPaper00025099:MA_specific
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
    Interaction: WBInteraction000007926
  Map_info: Map: V Position: -19.9945
    Positive: Positive_clone: M02H5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene