WormBase Tree Display for Gene: WBGene00004822

WBGene00004822 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C42D4
  Identity: Version: 1
    Name: CGC_name: skr-16 Person_evidence: WBPerson322
      Sequence_name: C42D4.6
      Molecular_name: C42D4.6
        C42D4.6.1
        CE37712
      Other_name: CELE_C42D4.6 Accession_evidence: NDB BX284604
      Public_name: skr-16
    DB_info: Database: AceView gene 4H931
        WormQTL gene WBGene00004822
        WormFlux gene WBGene00004822
        NDB locus_tag CELE_C42D4.6
        Panther gene CAEEL|WormBase=WBGene00004822|UniProtKB=Q18567
          family PTHR11165
        NCBI gene 191765
        RefSeq protein NM_068727.7
        TREEFAM TREEFAM_ID TF300142
        TrEMBL UniProtAcc Q18567
        UniProt_GCRP UniProtAcc Q18567
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skr
    Allele (11)
    RNASeq_FPKM (74)
    GO_annotation: 00061674
      00061675
      00061676
      00061677
      00061678
      00113228
    Ortholog (75)
    Paralog (20)
    Structured_description (2)
  Molecular_info: Corresponding_CDS: C42D4.6
    Corresponding_CDS_history: C42D4.6:wp134
    Corresponding_transcript: C42D4.6.1
    Other_sequence: CBC00716_1
    Associated_feature: WBsf646067
      WBsf228510
  Experimental_info: RNAi_result: WBRNAi00086795 Inferred_automatically: RNAi_primary
      WBRNAi00042358 Inferred_automatically: RNAi_primary
      WBRNAi00069094 Inferred_automatically: RNAi_primary
      WBRNAi00094690 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018259
      Expr1032397
      Expr1146345
      Expr2015843
      Expr2034076
    Drives_construct: WBCnstr00035362
    Construct_product: WBCnstr00035362
    Microarray_results (17)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050094:mes-2(bn11)_upregulated
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051305:vit-2(ac3)_downregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061007:HB101_downregulated
      WBPaper00061274:microgravity_upregulated
      WBPaper00061340:ASI_parent
      WBPaper00061340:OLQ_grandparent
      WBPaper00061527:skr-16-F37B4.10
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:tdp-1(csb38)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_D
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038427:lin-54_germline_changed
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      [cgc5767]:cluster_4
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(122_min)
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (20)
  Map_info: Map: IV Position: 3.29126 Error: 5.7e-05
    Positive: Positive_clone: C42D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene