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WormBase Tree Display for Gene: WBGene00004498

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Name Class

WBGene00004498SMapS_parentSequenceB0412
IdentityVersion1
NameCGC_namerps-29
Sequence_nameB0412.4
Molecular_nameB0412.4
B0412.4.1
CE26849
Other_nameCELE_B0412.4Accession_evidenceNDBBX284603
Public_namerps-29
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
Allele (14)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rps29 using blastP
StrainWBStrain00002343
RNASeq_FPKM (74)
GO_annotation00049653
00049654
00049655
00049656
00049657
00049658
00113037
00113038
00113039
00113040
Contained_in_operonCEOP3036
Ortholog (21)
Structured_descriptionConcise_descriptionrps-29 encodes a small ribosomal subunit S29 protein; by homology, RPS-29 is predicted to function in protein biosynthesis; in C. elegans, RPS-29 activity is broadly required for embryonic and germline development, normal body coloration and morphology, normal postembryonic growth rates, and the overall health of the animal.Paper_evidenceWBPaper00004403
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Is an ortholog of human RPS29 (ribosomal protein S29).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111889Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10419)
Molecular_infoCorresponding_CDSB0412.4
Corresponding_transcriptB0412.4.1
Other_sequence (327)
Associated_featureWBsf644926
WBsf991160
WBsf224396
WBsf224397
Experimental_infoRNAi_result (27)
Expr_patternChronogram1269
Expr5067
Expr1023586
Expr1032301
Expr1143196
Expr2015524
Expr2033759
Drives_constructWBCnstr00003012
Microarray_results (21)
Expression_clusterWBPaper00029359_1280
WBPaper00029359_1310
WBPaper00029359_1362
WBPaper00029359_1364
WBPaper00029359_1444
WBPaper00029359_1504
WBPaper00029359_1578
WBPaper00029359_1587
WBPaper00029359_1604
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032528:L3_enriched
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038118:aak-2(gt33)_downregulated
WBPaper00038118:stress_downregulated_N2
WBPaper00038357:atx-3_regulated_heat-shock
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_downregulated_HeatShock
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046303:P.aeruginosa_downregulated_protein
WBPaper00048923:Aging_regulated
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00050234:lin-28(RNAi)_downregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053615:SMO-1_target
WBPaper00055049:S.gordonii_downregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00056900:PID-3_interacting
WBPaper00056997:nmad-1(ok3133)_downregulated_germline_25C
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:rps-14_21270-rps-11_20714
WBPaper00061651:ADA_enriched
WBPaper00061651:ADE_enriched
WBPaper00061651:Distal_tip_cell_enriched
WBPaper00061651:Germline_enriched
WBPaper00061651:I4_enriched
WBPaper00061651:M1_enriched
WBPaper00061651:M2_enriched
WBPaper00061651:MI_enriched
WBPaper00061651:NSM_enriched
WBPaper00061651:PDB_enriched
WBPaper00061651:PVC_enriched
WBPaper00061651:PVM_enriched
WBPaper00061651:PVR_enriched
WBPaper00061651:RIG_enriched
WBPaper00061651:RIH_enriched
WBPaper00061651:Spermatheca_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062143:PQN-59_interacting
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064727:daf-2(e1370)_downregulated
WBPaper00065149:lin-52(n771)_downregulated
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066085:hda-3(ok1991)_downregulated
WBPaper00066085:sin-3(syb2172)_downregulated
cgc4489_group_2
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025032:cluster_107
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00028564:CeMM_vs_NGM_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_7
WBPaper00035479:daf-16(RNAi)_upregulated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040998:nhr-80_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc5767]:cluster_16
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(23_min)
[cgc5767]:expression_class_ME
Interaction (157)
Map_infoMapIIIPosition-25.9426Error0.030105
PositivePositive_cloneB0412Inferred_automatically (2)
Pseudo_map_position
ReferenceWBPaper00010022
WBPaper00024230
WBPaper00028564
WBPaper00035215
WBPaper00036019
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene