WormBase Tree Display for Gene: WBGene00003333

WBGene00003333 Evidence: Paper_evidence: WBPaper00005879
      WBPaper00005825
  SMap: S_parent: Sequence: C34E11
  Identity: Version: 1
    Name: CGC_name: mir-239.2 Person_evidence: WBPerson18
      Sequence_name: C34E11.6
      Molecular_name: C34E11.6
        C34E11.6a
        C34E11.6b
      Other_name: mir-239b Remark: miRBase V21 import
        cel-mir-239b Remark: miRBase V21 import
        Cel-Mir-305-P2 Remark: MirGeneDB 2.1 import
        CELE_C34E11.6 Accession_evidence: NDB BX284606
      Public_name: mir-239.2
    DB_info: Database: miRBase acc MI0000315
        SignaLink mirna cel-mir-239b
        MirGeneDB cel Cel-Mir-305-P2
        NDB locus_tag CELE_C34E11.6
        NCBI gene 3565868
        RefSeq protein NR_002416.2
        RNAcentral URSid URS0000506BCE
            URS0000587B0A
            URS00005BB985
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001265
    Gene_class: mir
    Allele: WBVar01499887
      WBVar01499888
      WBVar01499710
      WBVar02123435
      WBVar00518188
      WBVar02123487
      WBVar00323168
      WBVar02123334
      WBVar01498960
      WBVar01500067
    In_cluster: MIR-305
    RNASeq_FPKM (74)
    Structured_description: Concise_description: mir-239.2 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; miR-239.2 is weakly expressed in the embryo and strongly expressed at all other stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes. Paper_evidence: WBPaper00005825
          Curator_confirmed: WBPerson324
          Date_last_updated: 08 Feb 2005 00:00:00
      Automated_description: Is affected by several genes including daf-12; eat-2; and prg-1 based on tiling array and RNA-seq studies. Is affected by graphene oxide; sodium arsenite; and paraquat based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_transcript: C34E11.6
      C34E11.6a
      C34E11.6b
    Associated_feature: WBsf1007113
      WBsf1023937
  Experimental_info: Expr_pattern: Expr2514
      Expr10921
    Expression_cluster: WBPaper00040221:DAF-12_target_ALF4
      WBPaper00045209:graphene-oxide_upregulated
      WBPaper00045316:miRNA_N2_adult_vs_L4_downregulated_adult
      WBPaper00045316:miRNA_N2_L1_vs_embryo_upregulated_adult
      WBPaper00045316:miRNA_N2_L4_vs_L3_upregulated_adult
      WBPaper00045316:miRNA_prg-1_L1_vs_embryo_upregulated_adult
      WBPaper00045316:miRNA_prg-1_L2_vs_L1_upregulated_adult
      WBPaper00045316:miRNA_prg-1_L3_vs_L2_upregulated_adult
      WBPaper00045316:miRNA_prg-1_upregulated_adult
      WBPaper00045316:miRNA_prg-1_upregulated_L3
      WBPaper00046156:eat-2(ad1116)_Day1_upregulated
      WBPaper00046303:P.aeruginosa_upregulated_miRNA
      WBPaper00046567:HeatStress_upregulated
      WBPaper00049266:NaAsO2-Stress_regulated_trx-1(ok1449)
      WBPaper00049286:stau-1(tm2266)_upregulated
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00051404:alg-1(gk214)_upregulated_miRNA
      WBPaper00051404:alg-2(ok304)_upregulated_miRNA
      WBPaper00051404:alg-5(ram2)_downregulated_miRNA
      WBPaper00051404:alg-5(tm1163)_upregulated_miRNA
      WBPaper00053318:Aging_upregulated_miRNA_mir-71(n4115)
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057154:HeatShock_upregulated_miRNA
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_upregulated_N2
    Interaction: WBInteraction000500576
      WBInteraction000500577
    WBProcess: WBbiopr:00000001
  Map_info: Positive: Inside_rearr: nDf62
      Positive_clone: C34E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Pos_neg_data: 10936
    Interpolated_map_position: X 6.72588
  Reference: WBPaper00005825
    WBPaper00024441
    WBPaper00031335
    WBPaper00035664
    WBPaper00037855
    WBPaper00039808
    WBPaper00039813
    WBPaper00054944
    WBPaper00066207
  Method: Gene