WormBase Tree Display for Gene: WBGene00003064

WBGene00003064 Evidence: Paper_evidence: WBPaper00005707
  SMap: S_parent: Sequence: R10H10
  Identity: Version: 2
    Name: CGC_name: nfu-1 Person_evidence: WBPerson205
          Author_evidence: P. Kropp
      Sequence_name: R10H10.1
      Molecular_name: R10H10.1
        R10H10.1.1
        CE53043
      Other_name: ldp-8
        CELE_R10H10.1 Accession_evidence: NDB BX284604
      Public_name: nfu-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 19 Apr 2021 01:27:01 WBPerson1983 Name_change: CGC_name: nfu-1
                Other_name: ldp-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nfu
    Allele (21)
    Possibly_affected_by: WBVar02157210
      WBVar02157211
      WBVar02157212
      WBVar02157213
      WBVar02157214
      WBVar02157215
      WBVar02158607
    Strain: WBStrain00049819
    RNASeq_FPKM (74)
    GO_annotation: 00073274
      00073275
      00073276
      00073277
      00073278
      00073279
      00073280
      00110539
      00110540
      00110541
    Contained_in_operon: CEOP4376
    Ortholog (40)
    Structured_description (2)
  Disease_info: Experimental_model: DOID:0080133 Homo sapiens Paper_evidence: WBPaper00061852
          Curator_confirmed: WBPerson324
          Date_last_updated: 18 Jan 2022 00:00:00
    Potential_model: DOID:0080133 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16287)
  Models_disease_asserted: WBDOannot00001084
    WBDOannot00001085
    WBDOannot00001086
    WBDOannot00001087
    WBDOannot00001088
    WBDOannot00001089
  Molecular_info: Corresponding_CDS: R10H10.1
    Corresponding_CDS_history: R10H10.1:wp270
    Corresponding_transcript: R10H10.1.1
    Other_sequence (43)
    Associated_feature: WBsf228988
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1014575
      Expr1031442
      Expr1155403
      Expr2013255
      Expr2031486
    Drives_construct: WBCnstr00036253
    Construct_product: WBCnstr00036253
      WBCnstr00042900
      WBCnstr00042901
      WBCnstr00042902
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059328:mrps-5(RNAi)_upregulated_protein
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00061341:28C_48h_downregulated
      WBPaper00062293:isp-1(qm150)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065841:1_2
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_3_6
      cgc4489_group_2
      WBPaper00025032:cluster_8
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032948:StarveUp3
      WBPaper00034739:N2moreDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      [cgc5767]:cluster_1
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:intrinsic
    Interaction (49)
    WBProcess: WBbiopr:00000121
  Map_info: Map: IV Position: 4.57979 Error: 0.000279
    Positive: Positive_clone: R10H10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene