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WormBase Tree Display for Gene: WBGene00001522

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Name Class

WBGene00001522EvidenceCGC_data_submission
SMapS_parentSequenceD2089
IdentityVersion1
NameCGC_namegbh-1Person_evidenceWBPerson52
Sequence_nameD2089.5
Molecular_nameD2089.5
D2089.5.1
CE00940
Other_nameCELE_D2089.5Accession_evidenceNDBBX284602
Public_namegbh-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgbh
Allele (59)
RNASeq_FPKM (74)
GO_annotation (12)
Ortholog (36)
ParalogWBGene00001523Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_description (2)
Molecular_infoCorresponding_CDSD2089.5
Corresponding_transcriptD2089.5.1
Other_sequence (26)
Associated_featureWBsf650516
Experimental_infoRNAi_resultWBRNAi00002369Inferred_automaticallyRNAi_primary
WBRNAi00043512Inferred_automaticallyRNAi_primary
WBRNAi00030424Inferred_automaticallyRNAi_primary
Expr_patternExpr1026771
Expr1030916
Expr1147506
Expr2011958
Expr2030195
Drives_constructWBCnstr00036890
Construct_productWBCnstr00036890
Microarray_results (19)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040420:FLP_enriched
WBPaper00044030:nhr-8(hd117)_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_HighSalt
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00054191:H3.3(null)_L1_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:Intestine
WBPaper00061341:28C_24h_downregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061527:pbs-3_18439-rpn-5
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062456:doxycycline_upregulated_CB4856_protein
WBPaper00063930:BRD-1_interacting
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065841:18_0
cgc4489_group_7
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_7
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00029437:dcr-1_downregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00035588:alg-1(-)_upregulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00047070:N2_starvation_downregulated
WBPaper00049538:atfs-1(et18)_upregulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc5767]:cluster_17
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(83_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Interaction (62)
Map_infoMapIIPosition3.12352Error8.2e-05
PositivePositive_cloneD2089Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00011400
WBPaper00011648
WBPaper00018600
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Apicella AJ, Bazzicalupo P]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene