WormBase Tree Display for Gene: WBGene00009245

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WBGene00009245	SMap	S_parent	Sequence	CHROMOSOME_II
	Identity	Version	4
		Name	CGC_name	rict-1	Person_evidence	WBPerson7217
						WBPerson545
			Sequence_name	F29C12.3
			Molecular_name	F29C12.3a
				F29C12.3a.1
				CE43301
				F29C12.3b
				CE45435
				F29C12.3c
				CE45505
				F29C12.3b.1
				F29C12.3c.1
			Other_name	lpo-6	Paper_evidence	WBPaper00032966
				CELE_F29C12.3	Accession_evidence	NDB	BX284602
			Public_name	rict-1
		DB_info	Database	AceView	gene	2N388
				WormQTL	gene	WBGene00009245
				WormFlux	gene	WBGene00009245
				NDB	locus_tag	CELE_F29C12.3
				Panther	gene	CAEEL\|WormBase=WBGene00009245\|UniProtKB=G5EFN2
					family	PTHR13298
				NCBI	gene	3565035
				RefSeq	protein	NM_001267449.3
						NM_001267447.2
						NM_001267448.2
				TREEFAM	TREEFAM_ID	TF343656
				TrEMBL	UniProtAcc	G5ED67
						G5EFN2
						G5EFK2
				UniProt_GCRP	UniProtAcc	G5EFN2
		Species	Caenorhabditis elegans
		History	Version_change	1	26 May 2004 16:54:50	WBPerson1971	Event	Imported	Initial conversion from CDS class of WS125
				2	10 Oct 2005 16:20:12	WBPerson1983	Event	Acquires_merge	WBGene00009244
				3	28 Jan 2009 13:52:54	WBPerson2970	Name_change	CGC_name	rict-1
				4	22 Apr 2009 15:16:42	WBPerson9133	Name_change	Other_name	lpo-6
			Acquires_merge	WBGene00009244
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	rict
		Allele (535)
		Strain	WBStrain00023647
			WBStrain00023655
		RNASeq_FPKM (74)
		GO_annotation (12)
		Ortholog (61)
		Structured_description (2)
	Disease_info	Potential_model (12)
	Molecular_info	Corresponding_CDS	F29C12.3a
			F29C12.3b
			F29C12.3c
		Corresponding_CDS_history	F29C12.3:wp150
			F29C12.3:wp196
		Corresponding_transcript	F29C12.3a.1
			F29C12.3b.1
			F29C12.3c.1
		Other_sequence (17)
		Associated_feature (20)
	Experimental_info	RNAi_result (17)
		Expr_pattern	Expr8566
			Expr8569
			Expr1021765
			Expr1034033
			Expr1149811
			Expr2015350
			Expr2033584
		Drives_construct	WBCnstr00005615
			WBCnstr00013366
			WBCnstr00013367
		Construct_product (12)
		Microarray_results (30)
		Expression_cluster	WBPaper00031040:TGF-beta_adult_downregulated
			WBPaper00032031:DConiospora_upregulated_cDNA_24h
			WBPaper00032031:DConiospora_upregulated_OligoArray_24h
			WBPaper00035197:fer-1_downregulated
			WBPaper00035269:cde-1_regulated
			WBPaper00036375:enriched_in_PVD_OLL
			WBPaper00044426:rotenone_24h_downregulated
			WBPaper00044736:flat_dev_expression
			WBPaper00044760:germline_specific
			WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
			WBPaper00045420:fertilization_downregulated_transcript
			WBPaper00045571:germline-ablation_downregulated
			WBPaper00048988:neuron_expressed
			WBPaper00049942:hsf-1(RNAi)_upregulated
			WBPaper00050488:20C_vs_25C_regulated_N2_adult
			WBPaper00050488:adult_vs_dauer_regulated_N2_20C
			WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
			WBPaper00050990:arcade_intestinal-valve_expressed
			WBPaper00050990:hypodermis_expressed
			WBPaper00050990:intestine_expressed
			WBPaper00051039:germline_enriched
			WBPaper00052884:emb-4(hc60)_downregulated
			WBPaper00053184:sma-2(rax5)_downregulated
			WBPaper00053184:sma-4(rax3)_downregulated
			WBPaper00053302:alovudine_24h_regulated
			WBPaper00053321:PGCs_enriched_NuGen
			WBPaper00053810:daf-2(e1370)_upregulated
			WBPaper00053810:isp-1(qm150)_upregulated
			WBPaper00053814:15C_downregulated_OP50
			WBPaper00055334:DLC-1_interacting
			WBPaper00055354:Rapamycin_upregulated
			WBPaper00055648:germline_expressed
			WBPaper00055971:nhl-2(ok818)_25C_upregulated
			WBPaper00056139:gut-microbiota_downregulated
			WBPaper00056139:soil-microbiota_downregulated
			WBPaper00056165:MINA-1_interacting_mRNA
			WBPaper00056275:P.aeruginosa_downregulated
			WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
			WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
			WBPaper00056284:ints-1(RNAi)_upregulated
			WBPaper00056443:sek-1(km4)_downregulated
			WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
			WBPaper00056471:S.aureus-4h_upregulated_N2
			WBPaper00056826:hmc_biased
			WBPaper00057288:Cold_downregulated_transcript
			WBPaper00058598:sin-3(tm1276)_upregulated
			WBPaper00058691:sin-3(tm1276)_upregulated
			WBPaper00058958:100mGy-irradiation-72h_upregulated
			WBPaper00059174:MEG-3_interacting
			WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
			WBPaper00059664:srbc-48(ac23)_downregulated
			WBPaper00059824:rnp-6(dh1127)_regulated_OP50
			WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
			WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
			WBPaper00060683:hlh-11(ko1)_downregulated
			WBPaper00060909:atfs-1(et18)_upregulated
			WBPaper00061007:HB101_downregulated
			WBPaper00061007:S.aquatilis_downregulated
			WBPaper00061203:sin-3(tm1276)_downregulated
			WBPaper00061203:spr-1(ok2144)_downregulated
			WBPaper00061274:microgravity_upregulated
			WBPaper00061340:RID_parent
			WBPaper00061341:28C_48h_upregulated
			WBPaper00061479:HDA-1_interacting_protein
			WBPaper00061527:dpy-26-B0205.1
			WBPaper00061527:npp-8_4368-E01B7.1_7741
			WBPaper00062159:hda-2(ok1479)_downregulated
			WBPaper00062325:muscle_depleted_coding-RNA
			WBPaper00064502:spe-44(fx110)_upregulated
			WBPaper00064716:paraquat_upregulated
			WBPaper00065096:25C_vs_20C_upregulated
			WBPaper00065096:Day10_vs_Day1_upregulated
			WBPaper00065258:anchor-cell_depleted
			WBPaper00065835:Day5_vs_Day1_upregulated
			WBPaper00065993:glp-1(e2141)_downregulated
			WBPaper00066085:sin-3(syb2172)_upregulated
			WBPaper00066110:Doxorubicin_downregulated_diploid
			WBPaper00066110:tetraploid_vs_diploid_downregulated
			WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
			WBPaper00005124:progesterone_10-7M_regulated
			WBPaper00025032:cluster_1
			WBPaper00025141:N2_Expressed_Genes
			WBPaper00025141:unc-4::GFP_Expressed_Genes
			WBPaper00026929:sir-2.1_overexpression_regulated
			WBPaper00030839:Embryo_Pan_Neuronal
			WBPaper00031003:hlh_1_enriched
			WBPaper00031252:AIN-1_IP_enriched
			WBPaper00034661:AgNPs_downregulated
			WBPaper00035873:dpy-9_regulated
			WBPaper00035873:dpy-10_regulated
			WBPaper00035905:FBF-1_Associated
			WBPaper00036123:Cadmium_regulated
			WBPaper00036130:mir-243_down_regulated
			WBPaper00036286:Pattern_F
			WBPaper00037611:GLD-2-associated
			WBPaper00037695:WC_5-day
			WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
			WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
			WBPaper00040858:eQTL_age_regulated_developing
			WBPaper00040858:eQTL_regulated_reproductive
			WBPaper00040963:TA100_down
			WBPaper00040963:TA200_down
			WBPaper00040963:TA300_down
			WBPaper00041002:HF_11d_2.0mM_Up
			WBPaper00041606:CE_B.thuringiensis-DB27_regulated
			WBPaper00041606:CE_X.nematophila_regulated
			WBPaper00041906:I-3690_vs_OP50_3d
			WBPaper00041939:control_vs_EtBr-exposed_48h
			WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
			WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
			WBPaper00041939:control_vs_UVC-exposed_3h
			WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
			WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
			WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
			WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
			WBPaper00042234:xpa-1_upregulated
			WBPaper00045263:0.1mM-paraquat_upregulated
			WBPaper00045263:isp-1(qm150)_upregulated
			WBPaper00045263:nuo-6(qm200)_upregulated
			WBPaper00045263:ProLongevity-mtROS_upregulated
			WBPaper00046548:dafachronic-acid_downregulated
			WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
			WBPaper00048989:N2_rapamycin_downregulated
			WBPaper00048989:N2_rapamycin_upregulated
			WBPaper00053236:daf-16(mgDF50)_regulated_Starved
			WBPaper00053236:Starvation_regulated_N2
			WBPaper00057098:SiO2-nanoparticles_upregulated
			[cgc5767]:expression_class_E
			[cgc5767]:expression_class_ET
			[cgc5767]:expression_class_ET_max(23_min)
			[cgc5767]:expression_class_E_pi(23_min)
			[cgc5767]:expression_class_M
			[cgc5767]:expression_class_ME
			[cgc5767]:expression_class_MET
			[cgc6390]:Cluster_F
			[cgc6390]:mixed_oogenesis-somatic
		Interaction (32)
		WBProcess	WBbiopr:00000001
	Map_info	Map	II	Position	14.309	Error	0.044756
		Positive	Positive_clone	F29C12	Inferred_automatically	From sequence, transcript, pseudogene data
		Pseudo_map_position
	Reference	WBPaper00032936
		WBPaper00032966
		WBPaper00037622
		WBPaper00037861
		WBPaper00038491
		WBPaper00040247
		WBPaper00040402
		WBPaper00042375
		WBPaper00042679
		WBPaper00042976
		WBPaper00043619
		WBPaper00043656
		WBPaper00043971
		WBPaper00044096
		WBPaper00045519
		WBPaper00045812
		WBPaper00047564
		WBPaper00047869
		WBPaper00048131
		WBPaper00049277
		WBPaper00051289
		WBPaper00052434
		WBPaper00052501
		WBPaper00052584
		WBPaper00053668
		WBPaper00055090
		WBPaper00055111
		WBPaper00058809
		WBPaper00061869
		WBPaper00061901
		WBPaper00061997
		WBPaper00062518
		WBPaper00062676
		WBPaper00062724
		WBPaper00064064
		WBPaper00064071
		WBPaper00064980
		WBPaper00066161
		WBPaper00066317
	Remark	Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
	Method	Gene