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WormBase Tree Display for Gene: WBGene00004978

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Name Class

WBGene00004978SMapS_parentSequenceY47G6A
IdentityVersion3
NameCGC_namespg-7Person_evidenceWBPerson530
Sequence_nameY47G6A.10
Molecular_nameY47G6A.10
Y47G6A.10.1
CE34400
Other_namephi-23Person_evidenceWBPerson2582
let-517Person_evidenceWBPerson533
Y47G6A_247.gCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y47G6A.10Accession_evidenceNDBBX284601
Public_namespg-7
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
217 Mar 2005 13:54:35WBPerson2970Name_changeOther_namephi-23
305 Mar 2015 09:01:29WBPerson2970EventAcquires_mergeWBGene00002708
Name_changeOther_namelet-517
Acquires_mergeWBGene00002708
StatusLive
Gene_info (11)
Disease_infoPotential_modelDOID:0050977Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:315)
DOID:0050952Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:315)
DOID:0050944Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:315)
DOID:0080840Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:315)
Molecular_infoCorresponding_CDSY47G6A.10
Corresponding_CDS_historyY47G6A.10:wp102
Corresponding_transcriptY47G6A.10.1
Other_sequence (66)
Associated_feature (11)
Experimental_infoRNAi_result (117)
Expr_pattern (6)
Regulate_expr_clusterWBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
Microarray_results (20)
Expression_clusterWBPaper00005700:secreted_protein
WBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00035073:mitochondria_protein
WBPaper00035269:cde-1_regulated
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038213:E.coli(LF82)_72h_upregulated
WBPaper00038289:oocyte_protein
WBPaper00040446:insoluble_protein
WBPaper00040965:lipid-droplet_associated_protein
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_downregulated_HeatShock
WBPaper00045521:Gender_Neutral
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050599:nicotine(0.01mM)_upregulated
WBPaper00050698:DEP-1_interacting
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:NMDA-neuron_enriched
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:mitosis_vs_meiosis_upregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053615:SMO-1_target
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055969:electromagnetic-field_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059328:mrps-5(RNAi)_upregulated_protein
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00060006:nfyb-1(cu13)_upregulated_protein
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:pptr-1-F08D12.1
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064122:vulva_transcriptome
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065841:29_0
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
cgc4489_group_3
WBPaper00005124:progesterone_10-9M_regulated
WBPaper00027758:Group_IV
WBPaper00031003:hlh_1_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032948:FedUp
WBPaper00033101:spr-5_regulated
WBPaper00034661:AgNPs_downregulated
WBPaper00040185:nhr-23(RNAi)_downregulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042274:tbx-2(bx59)_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045263:ProLongevity-mtROS_upregulated
WBPaper00045865:biofilm_downregulated_A
WBPaper00048624:hlh-25(ok1710)_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc6390]:Cluster_C
Interaction (149)
WBProcessWBbiopr:00000077
WBbiopr:00000079
Map_infoMapIPosition-3.21963Error0.03887
Hide_underWBGene00002709
PositivePositive_cloneY47G6AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
NegativeOutside_rearrhDf24
Mapping_dataMulti_point5016
Pos_neg_data8616
8617
8618
8619
Pseudo_map_position
ReferenceWBPaper00003985
WBPaper00011963
WBPaper00011970
WBPaper00019419
WBPaper00024269
WBPaper00027723
WBPaper00029254
WBPaper00029435
WBPaper00031084
WBPaper00035659
WBPaper00035985
WBPaper00036249
WBPaper00038491
WBPaper00040589
WBPaper00041370
WBPaper00046786
WBPaper00047489
WBPaper00048493
WBPaper00049307
WBPaper00049531
WBPaper00049898
WBPaper00052880
WBPaper00055090
WBPaper00059413
WBPaper00060307
WBPaper00061178
WBPaper00061526
WBPaper00061852
WBPaper00061974
WBPaper00062237
WBPaper00062467
WBPaper00062573
WBPaper00062599
WBPaper00062642
WBPaper00063971
WBPaper00064182
WBPaper00064339
WBPaper00064568
WBPaper00064717
WBPaper00064934
WBPaper00065625
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene