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WormBase Tree Display for Gene: WBGene00000533

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Name Class

WBGene00000533SMapS_parentSequenceR07B7
IdentityVersion2
NameCGC_nameclh-6
Sequence_nameR07B7.1
Molecular_nameR07B7.1
R07B7.1.1
CE29336
Other_namecup-12Paper_evidenceWBPaper00050677
CELE_R07B7.1Accession_evidenceNDBBX284605
Public_nameclh-6
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
217 Feb 2017 10:31:31WBPerson2970Name_changeOther_namecup-12
StatusLive
Gene_info (11)
Disease_infoPotential_modelDOID:0110938Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2025)
DOID:0110944Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2025)
Molecular_infoCorresponding_CDSR07B7.1
Corresponding_CDS_historyR07B7.1:wp63
Corresponding_transcriptR07B7.1.1
Other_sequence (46)
Associated_featureWBsf234613
Experimental_infoRNAi_resultWBRNAi00051426Inferred_automaticallyRNAi_primary
WBRNAi00077550Inferred_automaticallyRNAi_primary
Expr_patternExpr829
Expr830
Expr1127
Expr6473
Expr16466
Expr1013700
Expr1030319
Expr1155115
Expr2010233
Expr2028475
Drives_constructWBCnstr00002568
WBCnstr00010095
WBCnstr00013238
WBCnstr00013247
WBCnstr00037467
WBCnstr00043044
Construct_productWBCnstr00013247
WBCnstr00037467
WBCnstr00043044
Microarray_results (20)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037055:DAF-16_binding_DNA
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-35_upregulated
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:AVH_parent
WBPaper00061466:nath-10(icb99)_upregulated
WBPaper00061527:kle-2_4298-vrk-1
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00036286:Pattern_B
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042258:DA1877_downregulated_GravidAdult
WBPaper00048563:L1_DD_enriched
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_E
[cgc6390]:mixed_oogenesis-somatic
Interaction (14)
Map_infoMapVPosition3.6217Error0.001257
PositivePositive_cloneR07B7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4470
5360
Pseudo_map_position
ReferenceWBPaper00004423
WBPaper00004547
WBPaper00005787
WBPaper00006402
WBPaper00010580
WBPaper00028357
WBPaper00038491
WBPaper00050677
WBPaper00053559
WBPaper00054621
WBPaper00055090
WBPaper00064400
WBPaper00064636
WBPaper00065267
WBPaper00066025
Remarksequence connection from [George AL]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene