WormBase Tree Display for Gene: WBGene00022882

WBGene00022882 SMap: S_parent: Sequence: ZK1248
  Identity: Version: 2
    Name: CGC_name: gtap-1 Person_evidence: WBPerson634
      Sequence_name: ZK1248.13
      Molecular_name: ZK1248.13
        ZK1248.13.1
        CE41604
      Other_name: CELE_ZK1248.13 Accession_evidence: NDB BX284602
      Public_name: gtap-1
    DB_info: Database: AceView gene 2G120
        WormQTL gene WBGene00022882
        WormFlux gene WBGene00022882
        NDB locus_tag CELE_ZK1248.13
        NCBI gene 173988
        RefSeq protein NM_062757.7
        TREEFAM TREEFAM_ID TF321115
        TrEMBL UniProtAcc Q23421
        UniProt_GCRP UniProtAcc Q23421
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:06 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Aug 2020 17:10:42 WBPerson1983 Name_change: CGC_name: gtap-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtap
    Allele (55)
    Strain: WBStrain00036112
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP2224
    Ortholog (38)
    Structured_description: Automated_description: Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalppppaa; ABplpppaapa; and germ line based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by nine chemicals including manganese chloride; Zidovudine; and antimycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1248.13
    Corresponding_CDS_history: ZK1248.13:wp94
      ZK1248.13:wp182
    Corresponding_transcript: ZK1248.13.1
    Other_sequence: CR11758
      CBC12415_1
      CBC03666_1
      CJC03839_1
      CRC10531_1
      CJC05622_1
    Associated_feature: WBsf665559
      WBsf665560
      WBsf223105
  Experimental_info: RNAi_result: WBRNAi00062485 Inferred_automatically: RNAi_primary
      WBRNAi00059183 Inferred_automatically: RNAi_primary
      WBRNAi00038182 Inferred_automatically: RNAi_primary
      WBRNAi00061958 Inferred_automatically: RNAi_primary
      WBRNAi00021845 Inferred_automatically: RNAi_primary
      WBRNAi00021844 Inferred_automatically: RNAi_primary
      WBRNAi00082499 Inferred_automatically: RNAi_primary
      WBRNAi00103649 Inferred_automatically: RNAi_primary
      WBRNAi00082671 Inferred_automatically: RNAi_primary
      WBRNAi00021843 Inferred_automatically: RNAi_primary
      WBRNAi00007409 Inferred_automatically: RNAi_primary
      WBRNAi00059184 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014074
      Expr1040122
      Expr1162602
      Expr2008738
      Expr2026973
    Drives_construct: WBCnstr00023897
    Construct_product: WBCnstr00023897
    Microarray_results (26)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00041071:spe-44_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051404:alg-5(ram2)_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:ADL_parent
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:RME_LR_parent
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:let-99_22121-B0238.9_11154
      WBPaper00061527:T02E1.2-uri-1
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062590:Aging_downregulated_body-wall-muscle
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_4_1
      cgc4489_group_2
      cgc4489_group_5
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00028948:cep-1(gk138)+UV_upregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036286:Pattern_H
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00038060:SUMO-1_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(66_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
      [cgc6390]:oogenesis-enriched
    Interaction (24)
  Map_info: Map: II Position: -0.894749
    Positive: Positive_clone: ZK1248 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene