WormBase Tree Display for Gene: WBGene00020822

WBGene00020822 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: Sequence_name: T26A5.6
      Molecular_name: T26A5.6a
        T26A5.6a.1
        CE29822
        T26A5.6b
        CE54538
        T26A5.6b.1
      Other_name: CELE_T26A5.6 Accession_evidence: NDB BX284603
      Public_name: T26A5.6
    DB_info: Database: AceView gene 3H538
        WormQTL gene WBGene00020822
        WormFlux gene WBGene00020822
        NDB locus_tag CELE_T26A5.6
        Panther gene CAEEL|WormBase=WBGene00020822|UniProtKB=Q22794
          family PTHR31017
        NCBI gene 175917
        RefSeq protein NM_001420553.1
            NM_066015.7
        TrEMBL UniProtAcc A0A8S4SRX5
            Q22794
        UniProt_GCRP UniProtAcc A0A8S4SRX5
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (35)
    RNASeq_FPKM (74)
    GO_annotation: 00076416
    Contained_in_operon: CEOP3384
    Ortholog (33)
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Is an ortholog of human AVL9 (AVL9 cell migration associated). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T26A5.6a
      T26A5.6b
    Corresponding_transcript: T26A5.6a.1
      T26A5.6b.1
    Other_sequence: Tcol_isotig03570
      BXC04661_1
      ACC09841_1
      JI215604.1
      Tcol_isotig03574
      Tcol_isotig03569
      Tcol_isotig03572
      Dviv_isotig19371
      EX555381.1
      FC554329.1
      EX559282.1
      Acan_isotig09627
      Tcol_isotig03573
      Oden_isotig19367
      HC08129
      HCC08912_1
      Tcol_isotig03566
      Tcol_isotig03567
      Tcol_isotig03571
      Tcol_isotig03568
      FC548815.1
    Associated_feature: WBsf651130
      WBsf666999
      WBsf992767
      WBsf226829
  Experimental_info: RNAi_result: WBRNAi00054168 Inferred_automatically: RNAi_primary
      WBRNAi00019241 Inferred_automatically: RNAi_primary
      WBRNAi00035981 Inferred_automatically: RNAi_primary
      WBRNAi00005377 Inferred_automatically: RNAi_primary
      WBRNAi00008133 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014703
      Expr1039071
      Expr1157714
      Expr2006518
      Expr2024737
    Drives_construct: WBCnstr00024860
    Construct_product: WBCnstr00024860
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:DVC_parent
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061340:PLM_ALN_grandparent
      WBPaper00061527:ima-1_20458-bath-41
      WBPaper00061902:camt-1(ok515)_regulated_AFD
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00037611:GLD-2-associated
      WBPaper00037611:RNP-8-associated
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5767]:cluster_14
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
    Interaction (13)
  Map_info: Positive: Positive_clone: T26A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -1.26298
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene