WormBase Tree Display for Gene: WBGene00014165

WBGene00014165 SMap: S_parent: Sequence: ZK945
  Identity: Version: 2
    Name: CGC_name: puf-12 Person_evidence: WBPerson320
            WBPerson1574
      Sequence_name: ZK945.3
      Molecular_name: ZK945.3
        ZK945.3.1
        CE01734
      Other_name: CELE_ZK945.3 Accession_evidence: NDB BX284602
      Public_name: puf-12
    DB_info: Database: AceView gene 2K391
        WormQTL gene WBGene00014165
        WormFlux gene WBGene00014165
        NDB locus_tag CELE_ZK945.3
        Panther gene CAEEL|WormBase=WBGene00014165|UniProtKB=Q09622
          family PTHR13389
        NCBI gene 174572
        RefSeq protein NM_063777.8
        SwissProt UniProtAcc Q09622
        TREEFAM TREEFAM_ID TF312954
        UniProt_GCRP UniProtAcc Q09622
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Oct 2006 13:36:27 WBPerson2970 Name_change: CGC_name: puf-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: puf
    Allele (33)
    Strain: WBStrain00055409
      WBStrain00054792
    RNASeq_FPKM (74)
    GO_annotation: 00055124
      00055125
      00055126
      00055127
      00120879
    Ortholog (38)
    Structured_description: Automated_description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of translation. Predicted to be located in nucleolus. Is an ortholog of human PUM3 (pumilio RNA binding family member 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK945.3
    Corresponding_transcript: ZK945.3.1
    Other_sequence: Acan_isotig14615
      PPC14704_1
      Oden_isotig14484
      Tcol_isotig06647
      AS08233
      PPC13915_1
      Dviv_isotig07789
      Hbac_isotig05617
      CR06070
      ACC12164_1
      Hbac_isotig03011
      EX011495.1
      CRC03376_1
      FC542106.1
      CR01981
      FF682065.1
      Tcir_isotig08375
      Acan_isotig10107
      EY471734.1
      EY464108.1
      EX562316.1
      HBC28614_1
      CSC00754_1
      ASC24352_1
      FK802282.1
      EY470418.1
      Dviv_isotig07792
      ACC22523_1
      FK809084.1
      GR979136.1
      CBC09150_1
      SC00616
      Dviv_isotig07790
      Oden_isotig14485
      JI165834.1
      CBC10171_1
      Dviv_isotig07791
      CJC17705_1
      EY465155.1
      FC549599.1
      HBC15907_1
      CRC03056_1
      BXC03416_1
      FD514536.1
    Associated_feature: WBsf221965
  Experimental_info: RNAi_result: WBRNAi00007630 Inferred_automatically: RNAi_primary
      WBRNAi00059847 Inferred_automatically: RNAi_primary
      WBRNAi00077915 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023473
      Expr1036346
      Expr1163276
      Expr2015186
      Expr2033420
    Drives_construct: WBCnstr00029258
    Construct_product: WBCnstr00029258
    Microarray_results (20)
    Expression_cluster: WBPaper00028451:Abundant_spermatogenesis_enriched
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00032425:up_in_zfp-1
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045420:fertilization_downregulated_protein
      WBPaper00045521:Gender_Neutral
      WBPaper00048910:Apoptosis-induced_mRNA-interacting_protein
      WBPaper00048910:mRNA-interacting_protein
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050698:DEP-1_interacting
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:nucleus_specific
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055969:electromagnetic-field_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056034:pals-25(jy9)_downregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
      WBPaper00057254:MWCNT_downregulated_mRNA
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_protein
      WBPaper00059471:EGL-43_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00061527:F53F4.11_10656-F44G4.1
      WBPaper00061651:Germline_enriched
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065841:11_0
      WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066083:hlh-17p-jmjd-1.2_upregulated
      cgc4386_cluster_6_3
      cgc4489_group_5
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_7
      WBPaper00025032:cluster_107
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00034739:N2moreDR1350
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_E
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038427:lin-54_germline_changed
      WBPaper00040963:TA100_up
      WBPaper00040963:TA200_up
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_16
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
    Interaction (236)
  Map_info: Map: II Position: 1.89707 Error: 0.003168
    Positive: Positive_clone: ZK945 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00045173
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene