WormBase Tree Display for Gene: WBGene00004426

WBGene00004426 SMap: S_parent: Sequence: C04F12
  Identity: Version: 1
    Name: CGC_name: rpl-14
      Sequence_name: C04F12.4
      Molecular_name: C04F12.4
        C04F12.4.1
        CE19677
      Other_name: CELE_C04F12.4 Accession_evidence: NDB BX284601
      Public_name: rpl-14
    DB_info: Database: AceView gene 1K265
        WormQTL gene WBGene00004426
        WormFlux gene WBGene00004426
        NDB locus_tag CELE_C04F12.4
        Panther gene CAEEL|WormBase=WBGene00004426|UniProtKB=Q9XVE9
          family PTHR11127
        NCBI gene 172818
        RefSeq protein NM_060175.9
        TREEFAM TREEFAM_ID TF314356
        TrEMBL UniProtAcc Q9XVE9
        UniProt_GCRP UniProtAcc Q9XVE9
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (14)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl14 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00102399
      00102400
      00102401
      00102402
      00102403
      00102404
      00112839
      00112840
      00112841
      00112842
    Ortholog (40)
    Structured_description: Concise_description: rpl-14 encodes a large ribosomal subunit L14 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Is an ortholog of human RPL14 (ribosomal protein L14). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9074 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10305)
  Molecular_info: Corresponding_CDS: C04F12.4
    Corresponding_transcript: C04F12.4.1
    Other_sequence: GQ422321.1
      ZPC00031_1
      EF634557.1
      HBC01304_1
      Tcir_isotig05852
      EX009803.1
      GQ422315.1
      EX915346.1
      ES740036.1
      FC820936.1
      GQ422326.1
      GQ422317.1
      HBC12646_1
      NBC01454_1
      Tcir_isotig13250
      PPC03590_1
      ES409008.1
      AS03075
      PTC03272_1
      HCC00673_2
      AE00400
      RS07384
      GQ422325.1
      CBC03428_1
      EX013912.1
      EX011325.1
      CB043758.1
      Name_isotig00716
      FE912069.1
      ES413415.1
      EX912058.1
      ASC00575_1
      HBC21511_1
      Dviv_isotig22341
      MC01017
      CR10822
      ES744281.1
      PT00743
      EX012624.1
      GO249387.1
      RS10023
      ES739411.1
      EX008320.1
      GQ422316.1
      FE909883.1
      GQ422314.1
      HBC00035_1
      FD516968.1
      FC821461.1
      ES413141.1
      Tcol_isotig02608
      DA03894
      BU087158.1
      ES743682.1
      NAC01439_1
      GP00294
      ASC15959_1
      EF634563.1
      CRC01349_1
      CSC00609_1
      ES739330.1
      HCC00673_1
      ES414305.1
      GQ422323.1
      CRC11078_1
      EX912170.1
      BU089266.1
      EG025439.1
      EX913063.1
      Acan_isotig01022
      GQ422327.1
      PPC00004_1
      EX013821.1
      EX007939.1
      SRC00014_1
      FE915503.1
      ES744005.1
      ES412931.1
      EX008491.1
      ES742475.1
      FE915945.1
      HBC17456_1
      NB07550
      EX010131.1
      TX00262
      GO248889.1
      FC820819.1
      EF634552.1
      HG10541
      EX912971.1
      Name_isotig00717
      EX014959.1
      TDC00055_1
      EF634560.1
      ES739338.1
      GQ422320.1
      EF634555.1
      EF634567.1
      EX012613.1
      GR11589
      AYC00367_1
      ACC02367_1
      GPC01446_1
      EX011927.1
      Dviv_isotig22342
      EX915490.1
      EF634564.1
      PP00535
      XIC01670_1
      HG03369
      EX013838.1
      SR00943
      FE913374.1
      ES410472.1
      EF634561.1
      GQ422319.1
      ES411263.1
      FE916551.1
      EX910362.1
      EF634566.1
      EF634553.1
      FE911474.1
      FE913855.1
      Acan_isotig01021
      AS15515
      ES741199.1
      Hbac_isotig06048
      Oden_isotig17902
      ES739122.1
      EX911430.1
      FE910901.1
      EF634568.1
      HGC00048_1
      EX015108.1
      BXC01056_1
      EX916362.1
      EX013425.1
      GO249279.1
      RSC00181_1
      FE916734.1
      EX911921.1
      ZP00106
      Tcol_isotig20963
      ES739607.1
      FC820897.1
      FE912211.1
      PE00025
      XI03452
      ES409580.1
      GQ422328.1
      EX007007.1
      EF634562.1
      GO250396.1
      MCC01019_1
      JI218306.1
      DAC02636_1
      EX912617.1
      JO472827.1
      FC821527.1
      EF634565.1
      MCC04857_1
      ES414246.1
      FE918183.1
      EX008116.1
      ES410369.1
      BU088923.1
      GQ422324.1
      EF634551.1
      EF634554.1
      GQ422318.1
      EX913159.1
      FE916439.1
      SSC00151_1
      GRC00630_1
      ES411482.1
      EX014275.1
      BU088340.1
      FC821564.1
      CB043722.1
      GQ422322.1
      BU086775.1
      EF634556.1
      BU087200.1
      BU087951.1
      EG025326.1
      BU087021.1
      SS01422
      EX910514.1
      FD517501.1
      Oden_isotig17903
      EF634558.1
      ES411474.1
      PEC00098_1
      ES744043.1
      HC03488
      FE918453.1
      HBC00322_2
      CBC11638_1
    Associated_feature: WBsf643609
      WBsf643610
      WBsf656782
      WBsf656783
      WBsf656784
      WBsf656785
      WBsf218326
      WBsf218327
      WBsf218328
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr1018145
      Expr1032230
      Expr1143727
      Expr2015442
      Expr2033677
    Drives_construct: WBCnstr00035495
    Construct_product: WBCnstr00035495
    Microarray_results (19)
    Expression_cluster: WBPaper00024704:Soluble_protein
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00037047:aging_accelerated_insoluble_protein
      WBPaper00037047:insoluble_protein
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00038118:aak-2(gt33)_downregulated
      WBPaper00038289:oocyte_protein
      WBPaper00038357:atx-3_regulated_heat-shock
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00041257:irradiation_downregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_Day5
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00045303:ZK1236.1(tm4178)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046691:P1_enriched
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049217:DAF-16_downregulated
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
      WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050636:aging_regulated_insoluble_protein
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00056900:PID-3_interacting
      WBPaper00056900:TOFU-6_interacting
      WBPaper00056900:TOST-1_interacting
      WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059254:CSR-1_interacting
      WBPaper00059254:PRG-1_interacting
      WBPaper00059254:WAGO-1_interacting
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059605:MUT-16_interacting
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060908:TEBP-1_interacting
      WBPaper00060908:TEBP-2_interacting
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061377:MYRF-2_interacting
      WBPaper00061377:PAN-1_interacting
      WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:rps-14_21270-rps-11_20714
      WBPaper00061651:ADA_enriched
      WBPaper00061651:Distal_tip_cell_enriched
      WBPaper00061651:Excretory_gland_cell_enriched
      WBPaper00061651:Germline_enriched
      WBPaper00061651:Gonadal_sheath_cell_enriched
      WBPaper00061651:I4_enriched
      WBPaper00061651:M1_enriched
      WBPaper00061651:M2_enriched
      WBPaper00061651:NSM_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00061651:RIH_enriched
      WBPaper00061651:Spermatheca_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062143:PQN-59_interacting
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_upregulated_hypodermis
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:let-7_miRNA_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064257:UNG-1_interacting
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064933:E.coli-binding_secret_protein
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066085:hda-3(ok1991)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      cgc4489_group_3
      WBPaper00025032:cluster_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00036123:Atrazine_regulated
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00053236:Starvation_regulated_N2
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc5767]:cluster_5
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_C
    Interaction (212)
  Map_info: Map: I Position: 3.85507 Error: 0.000719
    Positive: Positive_clone: C04F12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4781
    Pseudo_map_position
  Reference: WBPaper00004402
    WBPaper00024704
    WBPaper00025088
    WBPaper00034672
    WBPaper00035149
    WBPaper00038491
    WBPaper00055090
    WBPaper00060420
    WBPaper00064339
    WBPaper00065861
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene