WormBase Tree Display for Gene: WBGene00020803

WBGene00020803 SMap: S_parent: Sequence: T25E4
  Identity: Version: 1
    Name: Sequence_name: T25E4.1
      Molecular_name: T25E4.1
        T25E4.1.1
        CE28493
      Other_name: CELE_T25E4.1 Accession_evidence: NDB BX284602
      Public_name: T25E4.1
    DB_info: Database: AceView gene 2F869
        WormQTL gene WBGene00020803
        WormFlux gene WBGene00020803
        NDB locus_tag CELE_T25E4.1
        NCBI gene 173943
        RefSeq protein NM_062679.5
        SwissProt UniProtAcc Q10014
        TREEFAM TREEFAM_ID TF316987
        UniProt_GCRP UniProtAcc Q10014
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (19)
    RNASeq_FPKM (74)
    Ortholog: WBGene00097391 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00025495 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057332 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139672 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150545 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130016 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g6916 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g5452 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12658 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23509 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14011 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13887 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7330 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22018 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g25372 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7107 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00003.g263 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T25E4.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11371 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00331.g9547 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06092 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006069 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13596 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15293 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g8126 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20109800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4548 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00266523 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00017073 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including anterior hypodermis; arcade cell; germ line; neurons; and pharynx based on microarray; proteomic; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-five chemicals including methylmercury hydroxide; 1-methylnicotinamide; and Tunicamycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF5346 and Family of unknown function (DUF5346). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T25E4.1
    Corresponding_transcript: T25E4.1.1
    Other_sequence (12)
    Associated_feature: WBsf644212
      WBsf657601
      WBsf716687
      WBsf717670
      WBsf987910
      WBsf987911
      WBsf1012238
      WBsf1012239
      WBsf221302
  Experimental_info: RNAi_result: WBRNAi00035966 Inferred_automatically: RNAi_primary
      WBRNAi00054141 Inferred_automatically: RNAi_primary
      WBRNAi00002315 Inferred_automatically: RNAi_primary
      WBRNAi00019221 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021949
      Expr1039062
      Expr1157688
      Expr2006504
      Expr2024723
    Microarray_results (20)
    Expression_cluster: WBPaper00024505:pharyngeal_enriched
      WBPaper00024970:GABAergic_neuron_specific
      WBPaper00028451:Oogenic_protein
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_downregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040209:B.thuringiensis_upregulated_N2
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045316:prg-1_downregulated_L1
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046527:glucose_upregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00046805:P-granule-RNAi_downregulated_Set1
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049334:CE_intestine_enriched
      WBPaper00049498:npr-1(ur89)_regulated_4
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050109:rBmTX14_upregulated
      WBPaper00050332:daf-16(RNAi)_downregulated
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050801:SET-4_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053657:N2_M.humicola-infection_12hr
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:clk-1(qm30)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056169:rrf-3(pk1426)_downregulated_adult
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-1(m40)_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060445:nfki-1(cer1)_downregulated_L1
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060703:nas-38(ok3407)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_1h_regulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061007:HB115_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:skpo-1(ok1640)_upregulated_OP50
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061340:Anterior_arcade_cell
      WBPaper00061340:ant_arc_V
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:hyp1_hyp2
      WBPaper00061340:pm1_pm2
      WBPaper00061340:Posterior_arcade_cell
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:abu-7-abu-8_22491
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064728:cpl-1(W32AY35A)_upregulated
      WBPaper00064788:ketamine_upregulated
      WBPaper00064952:Day5_vs_Day1_downregulated_25C
      WBPaper00064952:Day5_vs_L4_downregulated_25C
      WBPaper00064952:Day10_vs_Day1_downregulated_20C
      WBPaper00064952:Day10_vs_Day1_downregulated_25C
      WBPaper00064952:Day10_vs_L4_downregulated_20C
      WBPaper00064952:Day10_vs_L4_downregulated_25C
      WBPaper00065029:cadmium_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065759:dot-1.1(knu339)_upregulated
      WBPaper00065841:114_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4386_cluster_1_5
      cgc4489_group_3
      WBPaper00025099:MA_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026952:class_E
      WBPaper00030839:Larval_A_Class
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:FedUp
      WBPaper00035227:heat_shock_regulated
      WBPaper00035560:ahr-1_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_G
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:TA300_up
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00049311:sAg-MNP_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_C
    Interaction (77)
  Map_info: Positive: Positive_clone: T25E4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -1.10776
  Method: Gene