WormBase Tree Display for Gene: WBGene00017065

WBGene00017065 SMap: S_parent: Sequence: D2092
  Identity: Version: 1
    Name: Sequence_name: D2092.4
      Molecular_name: D2092.4
        D2092.4.1
        CE30438
      Other_name: CELE_D2092.4 Accession_evidence: NDB BX284601
      Public_name: D2092.4
    DB_info: Database: AceView gene 1H188
        WormQTL gene WBGene00017065
        WormFlux gene WBGene00017065
        NDB locus_tag CELE_D2092.4
        Panther gene CAEEL|WormBase=WBGene00017065|UniProtKB=P91194
          family PTHR19991
        NCBI gene 172378
        RefSeq protein NM_059502.8
        TREEFAM TREEFAM_ID TF351502
        TrEMBL UniProtAcc P91194
        UniProt_GCRP UniProtAcc P91194
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (56)
    RNASeq_FPKM (74)
    GO_annotation: 00050249
      00050250
    Ortholog: WBGene00056131 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033597 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00148650 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00136644 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154938 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00217972 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00100299 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00152350 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00223324 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9619 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6078 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7126 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11143 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9614 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g24120 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17628 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13831 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14613 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g21073 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g21254 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6073 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00083.g3805 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-D2092.4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14671 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00687.g14418 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17447 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001803 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05945 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16482 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10333000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1202 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238518 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260318 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0039265 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0010482 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
    Structured_description: Automated_description: Located in myofibril. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D2092.4
    Corresponding_transcript: D2092.4.1
    Other_sequence (29)
    Associated_feature: WBsf649249
      WBsf983969
      WBsf983970
      WBsf219610
  Experimental_info: RNAi_result: WBRNAi00076262 Inferred_automatically: RNAi_primary
      WBRNAi00043517 Inferred_automatically: RNAi_primary
      WBRNAi00030427 Inferred_automatically: RNAi_primary
      WBRNAi00003294 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9579
      Expr1027594
      Expr1037331
      Expr1147511
      Expr2002096
      Expr2020321
    Drives_construct: WBCnstr00027596
    Construct_product: WBCnstr00014144
      WBCnstr00027596
    Microarray_results (18)
    Expression_cluster: WBPaper00005700:transmembrane_protein
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032425:up_in_zfp-1
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033065:isp-1-1(qm150)_downregulated
      WBPaper00037950:bodywall-muscle_CoreEnriched
      WBPaper00037950:bodywall-muscle_embryo_enriched
      WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044246:pgrn-1_ced-1_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045521:Spermatogenic
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00046121:mesoderm_unique
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049217:TCER-1_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_enriched
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:BWM_anterior
      WBPaper00061340:BWM_far_posterior
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:mu_int_mu_anal
      WBPaper00061340:mu_sph
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:mup-2-unc-87_284
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00064735:mys-1(RNAi)_vs_N2_upregulated
      WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
      WBPaper00065841:1_1
      WBPaper00065841:4_0
      WBPaper00065841:4_1
      WBPaper00065841:4_2
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:7_3
      WBPaper00065841:7_4
      WBPaper00065841:38_0
      WBPaper00065841:38_1
      WBPaper00065841:38_3
      WBPaper00065841:143_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066085:sin-3(syb2172)_upregulated
      WBPaper00066085:sin-3(tm1276)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4386_cluster_3_6
      cgc4489_group_12
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00031832:slr-2_regulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_C
      WBPaper00040426:CYD-1_CDK-4_downregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00049311:sAg-MNP_regulated
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000438977
      WBInteraction000444864
      WBInteraction000444865
      WBInteraction000444866
      WBInteraction000552459
  Map_info: Positive: Positive_clone: D2092 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 1.24486
  Reference: WBPaper00010052
    WBPaper00025345
    WBPaper00030887
    WBPaper00038444
    WBPaper00038491
    WBPaper00061547
  Method: Gene