WormBase Tree Display for Gene: WBGene00009666

WBGene00009666 SMap: S_parent: Sequence: F43G9
  Identity: Version: 2
    Name: CGC_name: slc-25A42 Person_evidence: WBPerson555
      Sequence_name: F43G9.3
      Molecular_name: F43G9.3
        F43G9.3.1
        CE10358
        F43G9.3.2
      Other_name: CELE_F43G9.3 Accession_evidence: NDB BX284601
      Public_name: slc-25A42
    DB_info: Database: AceView gene 1J190
        WormQTL gene WBGene00009666
        WormFlux gene WBGene00009666
        NDB locus_tag CELE_F43G9.3
        Panther gene CAEEL|WormBase=WBGene00009666|UniProtKB=Q93717
          family PTHR24089
        NCBI gene 172656
        RefSeq protein NM_059932.5
        TREEFAM TREEFAM_ID TF314806
        TrEMBL UniProtAcc Q93717
        UniProt_GCRP UniProtAcc Q93717
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 27 Apr 2016 14:42:59 WBPerson2970 Name_change: CGC_name: slc-25A42
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: slc
    Allele (28)
    Strain: WBStrain00002106
    RNASeq_FPKM (74)
    GO_annotation: 00086498
      00086499
      00086500
      00117300
    Contained_in_operon: CEOP1488
    Ortholog: WBGene00060097 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033444 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142087 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00129593 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224327 Brugia malayi From_analysis: WormBase-Compara
      WBGene00229655 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9668 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5050 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12423 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1731 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2274 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8271 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7693 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11019 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20267 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24329 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00072.g3425 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-slc-25A42 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20458 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02937.g28458 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_02937.g28463 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07064 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002627 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14128 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20646 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10313800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1628 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238165 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00248453 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278340 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263070 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00263288 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291919 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001044 Saccharomyces cerevisiae From_analysis: OMA
            Panther
      FB:FBgn0067783 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060825-313 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:28380 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1920345 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1592346 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (35)
    Structured_description: Automated_description: Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in head. Is an ortholog of human SLC25A42 (solute carrier family 25 member 42). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43G9.3
    Corresponding_transcript: F43G9.3.1
      F43G9.3.2
    Other_sequence (36)
    Associated_feature: WBsf649401
      WBsf664586
      WBsf219952
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr6064
      Expr1010384
      Expr1034224
      Expr1151082
      Expr2015871
      Expr2034104
    Drives_construct: WBCnstr00002810
      WBCnstr00032011
    Construct_product: WBCnstr00016478
      WBCnstr00032011
    Microarray_results (20)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Spermatogenic
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061527:dld-1-skn-1_16701
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_2
      cgc4489_group_11
      cgc4489_group_18
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00031003:hlh_1_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:differentially_expressed_with_age_medoid_3
      WBPaper00034739:N2moreDR1350
      WBPaper00035560:ahr-1_downregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_E
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_E
      [cgc6390]:Cluster_F
      [cgc6390]:intrinsic
      [cgc6390]:oogenesis-enriched
    Interaction (36)
  Map_info: Positive: Positive_clone: F43G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 2.99609
  Reference: WBPaper00028984
    WBPaper00038491
    WBPaper00041771
    WBPaper00055090
  Method: Gene