WormBase Tree Display for Gene: WBGene00009128

WBGene00009128 SMap: S_parent: Sequence: F25H5
  Identity: Version: 2
    Name: CGC_name: mrpl-54 Person_evidence: WBPerson261
      Sequence_name: F25H5.6
      Molecular_name: F25H5.6
        F25H5.6.1
        CE29591
      Other_name: CELE_F25H5.6 Accession_evidence: NDB BX284601
      Public_name: mrpl-54
    DB_info: Database: AceView gene 1J734
        WormQTL gene WBGene00009128
        WormFlux gene WBGene00009128
        NDB locus_tag CELE_F25H5.6
        Panther gene CAEEL|WormBase=WBGene00009128|UniProtKB=O17839
          family PTHR28595
        NCBI gene 172741
        RefSeq protein NM_060054.5
        TREEFAM TREEFAM_ID TF314007
        TrEMBL UniProtAcc O17839
        UniProt_GCRP UniProtAcc O17839
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-54
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (11)
    RNASeq_FPKM (74)
    GO_annotation: 00030799
      00030800
      00030801
      00030802
      00030803
    Contained_in_operon: CEOP1540
    Ortholog: WBGene00036736 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00060922 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00156427 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00146028 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00135959 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223853 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12248 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6758 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20497 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17850 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g17856 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10899 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20444 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g4283 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6562 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10777 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18784 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24119 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4500 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_02903.g17615 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mrpl-54 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8122 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06005.g35916 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06262 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001418 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05621 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20897 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10113400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1756 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248597 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260810 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000000472 Saccharomyces cerevisiae From_analysis: OrthoFinder
            Panther
      FB:FBgn0034579 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050208-381 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:16685 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913297 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1305694 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL54 (mitochondrial ribosomal protein L54). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25H5.6
    Corresponding_CDS_history: F25H5.6:wp67
    Corresponding_transcript: F25H5.6.1
    Other_sequence (32)
    Associated_feature: WBsf649451
      WBsf220046
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr1016293
      Expr1033978
      Expr1149466
      Expr2013730
      Expr2031965
    Drives_construct: WBCnstr00032442
    Construct_product: WBCnstr00032442
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_lin-35
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038118:aak-2(gt33)_downregulated
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061340:pm7
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:mrpl-54-lbp-4
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_3_6
      cgc4489_group_2
      WBPaper00025032:cluster_96
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_24
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000008229
      WBInteraction000008230
      WBInteraction000008231
      WBInteraction000008232
      WBInteraction000521138
      WBInteraction000548905
      WBInteraction000568972
      WBInteraction000569060
  Map_info: Map: I Position: 3.62901
    Positive: Positive_clone: F25H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene